PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G234200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | SRS | ||||||||
Protein Properties | Length: 316aa MW: 34218.6 Da PI: 8.1523 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 221.1 | 2.3e-68 | 94 | 246 | 4 | 153 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrelkskkqsalss 88 g+++CqdCGnqakkdC h RCRtCCksrgf C+thvkstWv+aakrrerqqqlaa+++++++++ +++kr+re+ + +s+l++ Potri.005G234200.1 94 GGMNCQDCGNQAKKDCPHLRCRTCCKSRGFPCNTHVKSTWVSAAKRRERQQQLAALQQHNQQQEqhqqqfLGENPKRQREN-HGGASSLAC 183 789****************************************************99988777755543333444555543.556666777 PP DUF702 89 tklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 t+l+ ++ + le + +P+ev+s+a+frcv+vs++dd++++laYqtav+igGhvf+GiLydqG++ Potri.005G234200.1 184 TRLAATT--SGLELTAFPPEVNSDAIFRCVKVSAMDDADDQLAYQTAVNIGGHVFRGILYDQGAD 246 7766665..5689999***********************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 8.2E-66 | 95 | 246 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 2.6E-25 | 97 | 139 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.8E-25 | 197 | 244 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MAGWFYLGGG EGPSRKQDQE KEDNNSSLFL YRPSNEEIYN NKGFELWPQY YHQQQNMNSF 60 SFGVGPSRRS LSDDHSSRSG FSLTRQGGGG GLRGGMNCQD CGNQAKKDCP HLRCRTCCKS 120 RGFPCNTHVK STWVSAAKRR ERQQQLAALQ QHNQQQEQHQ QQFLGENPKR QRENHGGASS 180 LACTRLAATT SGLELTAFPP EVNSDAIFRC VKVSAMDDAD DQLAYQTAVN IGGHVFRGIL 240 YDQGADGRYA STGGESSSSG AQQLLITAAG TSTTGTTTNT SNPAAGNTLL DPSSLYPAPL 300 NAFIAGTQFF APPRS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.005G234200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024456842.1 | 0.0 | protein SHI RELATED SEQUENCE 5 | ||||
Swissprot | Q9LQZ5 | 1e-91 | SRS5_ARATH; Protein SHI RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2K2ALD7 | 0.0 | A0A2K2ALD7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s25560.1 | 1e-171 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF882 | 34 | 125 | Representative plant | OGRP1872 | 11 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75520.1 | 2e-71 | SHI-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G234200.1 |
Publications ? help Back to Top | |||
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