PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G200100.4
Common NamePOPTR_0005s22180g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 464aa    MW: 52828.5 Da    PI: 4.4621
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G200100.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.91.9e-53171432128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                         ppGfrFhPtdeelv +yLkkk+ +k+++l ++i+e+d+yk++P++Lp +  +k+++++w+fFs+rd+ky++g r+nrat++gyWkatgkd+
  Potri.005G200100.4  17 PPGFRFHPTDEELVLYYLKKKICKKRIKL-NIIRELDVYKWDPEELPgQsILKTGDRQWFFFSPRDRKYPNGARSNRATRQGYWKATGKDR 106
                         8****************************.89**************96446788999********************************** PP

                 NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          v++ ++++vg+kktLvfy+grap+g++tdWvmhey+l
  Potri.005G200100.4 107 IVVC-NSRNVGVKKTLVFYRGRAPSGQRTDWVMHEYTL 143
                         ****.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-6110166IPR003441NAC domain
PROSITE profilePS5100555.58816166IPR003441NAC domain
PfamPF023653.2E-2817143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MKVTADSCLG ADETAWPPGF RFHPTDEELV LYYLKKKICK KRIKLNIIRE LDVYKWDPEE  60
LPGQSILKTG DRQWFFFSPR DRKYPNGARS NRATRQGYWK ATGKDRIVVC NSRNVGVKKT  120
LVFYRGRAPS GQRTDWVMHE YTLDEEELNR CPNVQDYYAL YKVFKKSGPG PKNGEQYGAP  180
FKEEDWADDE NPCVNSLVTP EIPVEQHNEV SLVDNVRVSA QLELPLNDFE DIIKQIAEEP  240
ALNHLQNNDF TYPLPQVASE EEAQSTLVDP SFREVVSEPA GELTTSGQHY NKHTSLNFNQ  300
SATSTLQLHE ASEVTSAPQL NEEDFLEIDD LIGPEPSFYN TEQPAENLQF DGLSEFDLYH  360
DAAMFLRDIG PVDQEAVSCS YVSSYGCDMV NQASYRLQPN SITNPVDYQL QPNLVANQVD  420
YELHPQFFDA EQMNNQLWVH DHQNNALATS ESHHGILFQS TGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-481716618165NO APICAL MERISTEM PROTEIN
1ut4_B2e-481716618165NO APICAL MERISTEM PROTEIN
1ut7_A2e-481716618165NO APICAL MERISTEM PROTEIN
1ut7_B2e-481716618165NO APICAL MERISTEM PROTEIN
4dul_A2e-481716618165NAC domain-containing protein 19
4dul_B2e-481716618165NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G200100.4
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024457415.10.0NAC domain-containing protein 17 isoform X1
SwissprotQ9XIC51e-132NAC17_ARATH; NAC domain-containing protein 17
TrEMBLA0A2K2AJE60.0A0A2K2AJE6_POPTR; Uncharacterized protein
STRINGPOPTR_0005s22180.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-118NAC domain containing protein 17
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Van Aken O,Ford E,Lister R,Huang S,Millar AH
    Retrograde signalling caused by heritable mitochondrial dysfunction is partially mediated by ANAC017 and improves plant performance.
    Plant J., 2016. 88(4): p. 542-558
    [PMID:27425258]
  4. Hu Z, et al.
    Mitochondrial Defects Confer Tolerance against Cellulose Deficiency.
    Plant Cell, 2016. 28(9): p. 2276-2290
    [PMID:27543091]
  5. Chi YH, et al.
    The membrane-tethered NAC transcription factor, AtNTL7, contributes to ER-stress resistance in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2017. 488(4): p. 641-647
    [PMID:28088515]
  6. Van Aken O,Pogson BJ
    Convergence of mitochondrial and chloroplastic ANAC017/PAP-dependent retrograde signalling pathways and suppression of programmed cell death.
    Cell Death Differ., 2017. 24(6): p. 955-960
    [PMID:28498364]
  7. Cheng P, et al.
    The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 182
    [PMID:29497438]