PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G200100.3 | ||||||||
Common Name | POPTR_0005s22180g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 480aa MW: 53367.4 Da PI: 4.6917 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.8 | 2.1e-53 | 17 | 143 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 ppGfrFhPtdeelv +yLkkk+ +k+++l ++i+e+d+yk++P++Lp + +k+++++w+fFs+rd+ky++g r+nrat++gyWkatgkd+ Potri.005G200100.3 17 PPGFRFHPTDEELVLYYLKKKICKKRIKL-NIIRELDVYKWDPEELPgQsILKTGDRQWFFFSPRDRKYPNGARSNRATRQGYWKATGKDR 106 8****************************.89**************96446788999********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v++ ++++vg+kktLvfy+grap+g++tdWvmhey+l Potri.005G200100.3 107 IVVC-NSRNVGVKKTLVFYRGRAPSGQRTDWVMHEYTL 143 ****.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-61 | 10 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.588 | 16 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-28 | 17 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MKVTADSCLG ADETAWPPGF RFHPTDEELV LYYLKKKICK KRIKLNIIRE LDVYKWDPEE 60 LPGQSILKTG DRQWFFFSPR DRKYPNGARS NRATRQGYWK ATGKDRIVVC NSRNVGVKKT 120 LVFYRGRAPS GQRTDWVMHE YTLDEEELNR CPNVQDYYAL YKVFKKSGPG PKNGEQYGAP 180 FKEEDWADDE NPCVNSLVTP EIPVEQHNEV SLVDNVRVSA QLELPLNDFE DIIKQIAEEP 240 ALNHLQNNDF TYPLPQVASE EEAQSTLVDP SFREVVSEPA GELTTSGQHY NKHTSLNFNQ 300 SATSTLQLHE ASEVTSAPQL NEEDFLEIDD LIGPEPSFYN TEQPAENLQF DGLSEFDLYH 360 DAAIDNSTGA NGNQGSKEGD AANGWLSSAL WGFVESIPTT PASASENPLV NKAFERMSSF 420 SRIRMNVKNI NVDAGNGAAS ARSTGGNKGF VLLSIIGVLC AILWVLVGGA KVLGRSISS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-48 | 17 | 166 | 18 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-48 | 17 | 166 | 18 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-48 | 17 | 166 | 18 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-48 | 17 | 166 | 18 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-48 | 17 | 172 | 21 | 174 | NAC domain-containing protein 19 |
3swm_B | 9e-48 | 17 | 172 | 21 | 174 | NAC domain-containing protein 19 |
3swm_C | 9e-48 | 17 | 172 | 21 | 174 | NAC domain-containing protein 19 |
3swm_D | 9e-48 | 17 | 172 | 21 | 174 | NAC domain-containing protein 19 |
3swp_A | 9e-48 | 17 | 172 | 21 | 174 | NAC domain-containing protein 19 |
3swp_B | 9e-48 | 17 | 172 | 21 | 174 | NAC domain-containing protein 19 |
3swp_C | 9e-48 | 17 | 172 | 21 | 174 | NAC domain-containing protein 19 |
3swp_D | 9e-48 | 17 | 172 | 21 | 174 | NAC domain-containing protein 19 |
4dul_A | 7e-48 | 17 | 166 | 18 | 165 | NAC domain-containing protein 19 |
4dul_B | 7e-48 | 17 | 166 | 18 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.005G200100.3 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024457416.1 | 0.0 | NAC domain-containing protein 17 isoform X2 | ||||
Swissprot | Q9XIC5 | 1e-128 | NAC17_ARATH; NAC domain-containing protein 17 | ||||
TrEMBL | A0A2K2AJE6 | 0.0 | A0A2K2AJE6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s22180.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 1e-114 | NAC domain containing protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G200100.3 |
Entrez Gene | 7492503 |