PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G200100.1 | ||||||||
Common Name | POPTR_0005s22180g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 584aa MW: 65043.2 Da PI: 4.5857 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.3 | 2.9e-53 | 17 | 143 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 ppGfrFhPtdeelv +yLkkk+ +k+++l ++i+e+d+yk++P++Lp + +k+++++w+fFs+rd+ky++g r+nrat++gyWkatgkd+ Potri.005G200100.1 17 PPGFRFHPTDEELVLYYLKKKICKKRIKL-NIIRELDVYKWDPEELPgQsILKTGDRQWFFFSPRDRKYPNGARSNRATRQGYWKATGKDR 106 8****************************.89**************96446788999********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v++ ++++vg+kktLvfy+grap+g++tdWvmhey+l Potri.005G200100.1 107 IVVC-NSRNVGVKKTLVFYRGRAPSGQRTDWVMHEYTL 143 ****.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.32E-61 | 10 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.588 | 16 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-28 | 17 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 584 aa Download sequence Send to blast |
MKVTADSCLG ADETAWPPGF RFHPTDEELV LYYLKKKICK KRIKLNIIRE LDVYKWDPEE 60 LPGQSILKTG DRQWFFFSPR DRKYPNGARS NRATRQGYWK ATGKDRIVVC NSRNVGVKKT 120 LVFYRGRAPS GQRTDWVMHE YTLDEEELNR CPNVQDYYAL YKVFKKSGPG PKNGEQYGAP 180 FKEEDWADDE NPCVNSLVTP EIPVEQHNEV SLVDNVRVSA QLELPLNDFE DIIKQIAEEP 240 ALNHLQNNDF TYPLPQVASE EEAQSTLVDP SFREVVSEPA GELTTSGQHY NKHTSLNFNQ 300 SATSTLQLHE ASEVTSAPQL NEEDFLEIDD LIGPEPSFYN TEQPAENLQF DGLSEFDLYH 360 DAAMFLRDIG PVDQEAVSCS YVSSYGCDMV NQASYRLQPN SITNPVDYQL QPNLVANQVD 420 YELHPQFFDA EQMNNQLWVH DHQNNALATS ESHHGILFQS TGAVCESSDN STGANGNQGS 480 KEGDAANGWL SSALWGFVES IPTTPASASE NPLVNKAFER MSSFSRIRMN VKNINVDAGN 540 GAASARSTGG NKGFVLLSII GVLCAILWVL VGGAKVLGRS ISS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-49 | 13 | 143 | 12 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.005G200100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024457415.1 | 0.0 | NAC domain-containing protein 17 isoform X1 | ||||
TrEMBL | A0A2K2AJE6 | 0.0 | A0A2K2AJE6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s22180.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6131 | 34 | 51 | Representative plant | OGRP9932 | 7 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 1e-153 | NAC domain containing protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G200100.1 |
Entrez Gene | 7492503 |