PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G191700.2 | ||||||||
Common Name | POPTR_0005s21390g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Trihelix | ||||||||
Protein Properties | Length: 404aa MW: 46885.2 Da PI: 6.7255 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 83.8 | 2.2e-26 | 112 | 208 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 +Wt+++v++Li+a+++++e+ +++ +kk++W++vsk+m+ergf++sp+qC++k+++lnkryk+++++ +++ +++++++ Potri.005G191700.2 112 KWTDKMVRLLITAVSYIGEDATSDCgggmrrrftvlQKKGKWKSVSKVMAERGFHVSPQQCEDKFNDLNKRYKRLNDMLGRGtSCQVVENP 202 7*********************99888999999999**********************************************569999888 PP trihelix 80 pyfdql 85 +++d + Potri.005G191700.2 203 ALLDVI 208 887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 5.4E-24 | 110 | 235 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MIPGGAPFGG PDLQGSMRVH HQGQHPHIVH HHQHPIHRQG SSTHPSVHDG FPLTMGAMHK 60 SDQNMSMTDY NKGDGRKNSV SDEDEPSYTE EGADGHSDVR RGKKGTPWHR VKWTDKMVRL 120 LITAVSYIGE DATSDCGGGM RRRFTVLQKK GKWKSVSKVM AERGFHVSPQ QCEDKFNDLN 180 KRYKRLNDML GRGTSCQVVE NPALLDVIDY LTEKDKDDVR KILSSKHLFY EEMCSYHNGN 240 RLHLPHDPAL QRSLQLALRS RDDHDNDDVR RNQLDDLDED DQEIETDDHD EFGENHASHG 300 DRSSYSHPQI AQVDMNQVSP ESSRASWLQK QWMESRTLEL EEQNLKIQQE MLELEKQRFK 360 WQRFSKKRDR ELEKLRMENE RMKLENERMT LELKRKEMGA DFN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.005G191700.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024457397.1 | 0.0 | uncharacterized protein LOC7492466 | ||||
Refseq | XP_024457398.1 | 0.0 | uncharacterized protein LOC7492466 | ||||
Refseq | XP_024457399.1 | 0.0 | uncharacterized protein LOC7492466 | ||||
Refseq | XP_024457400.1 | 0.0 | uncharacterized protein LOC7492466 | ||||
Refseq | XP_024457401.1 | 0.0 | uncharacterized protein LOC7492466 | ||||
TrEMBL | A0A2K2AIZ1 | 0.0 | A0A2K2AIZ1_POPTR; Uncharacterized protein | ||||
TrEMBL | A0A3N7F618 | 0.0 | A0A3N7F618_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s21390.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 1e-151 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G191700.2 |
Entrez Gene | 7492466 |