PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G191700.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 439aa    MW: 50474 Da    PI: 6.8513
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G191700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.62.5e-26112208185
            trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 
                         +Wt+++v++Li+a+++++e+  +++           +kk++W++vsk+m+ergf++sp+qC++k+++lnkryk+++++ +++ +++++++ 
  Potri.005G191700.1 112 KWTDKMVRLLITAVSYIGEDATSDCgggmrrrftvlQKKGKWKSVSKVMAERGFHVSPQQCEDKFNDLNKRYKRLNDMLGRGtSCQVVENP 202
                         7*********************99888999999999**********************************************569999888 PP

            trihelix  80 pyfdql 85 
                         +++d +
  Potri.005G191700.1 203 ALLDVI 208
                         887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.5E-24110235No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MIPGGAPFGG PDLQGSMRVH HQGQHPHIVH HHQHPIHRQG SSTHPSVHDG FPLTMGAMHK  60
SDQNMSMTDY NKGDGRKNSV SDEDEPSYTE EGADGHSDVR RGKKGTPWHR VKWTDKMVRL  120
LITAVSYIGE DATSDCGGGM RRRFTVLQKK GKWKSVSKVM AERGFHVSPQ QCEDKFNDLN  180
KRYKRLNDML GRGTSCQVVE NPALLDVIDY LTEKDKDDVR KILSSKHLFY EEMCSYHNGN  240
RLHLPHDPAL QRSLQLALRS RDDHDNDDVR RNQLDDLDED DQEIETDDHD EFGENHASHG  300
DSRGIHGVLG GSAKRPRPGQ GHEDVYFGNS SQDPNKGSSY SHPQIAQVDM NQVSPESSRA  360
SWLQKQWMES RTLELEEQNL KIQQEMLELE KQRFKWQRFS KKRDRELEKL RMENERMKLE  420
NERMTLELKR KEMGADFN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1313317KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G191700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024457397.10.0uncharacterized protein LOC7492466
RefseqXP_024457398.10.0uncharacterized protein LOC7492466
RefseqXP_024457399.10.0uncharacterized protein LOC7492466
RefseqXP_024457400.10.0uncharacterized protein LOC7492466
RefseqXP_024457401.10.0uncharacterized protein LOC7492466
TrEMBLA0A3N7F6180.0A0A3N7F618_POPTR; Uncharacterized protein
STRINGPOPTR_0005s21390.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50013157
Representative plantOGRP27961329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-158sequence-specific DNA binding transcription factors