PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G175300.1
Common NamePOPTR_0005s15900g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 504aa    MW: 55409.4 Da    PI: 5.9755
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G175300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3351.4e-1021084961374
                GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal.ppsetsekn............ss 75 
                         lv+lL+++Aea++   ++  la+ +L rl+el+sp++ ++m+Rlaayft AL+  l +s+s  +++  + +++ +++            +s
  Potri.005G175300.1 108 LVHLLMAAAEALTGlnKNRDLARVILVRLKELVSPNDgTNMERLAAYFTDALQGLLEGSGSIHSNKHlSGTNNGPYHhhhrddpqhhhhQS 198
                         68**********98446667************8887669*****************99665433322133333222244556678888899 PP

                GRAS  76 eelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetg 162
                         ++laa++l++++sP++kf+h+taNqaIleav+ ++r+Hi+D+di++G+QW++L+qaL sR++gpp  +lRiT++++  sg  s  +++etg
  Potri.005G175300.1 199 DVLAAFQLLQDMSPYVKFGHFTANQAILEAVADDRRIHIVDYDIMEGIQWASLMQALVSRKDGPPtpHLRITALSRGGSGrrSIGTVQETG 289
                         9999*********************************************************776556*********888898999****** PP

                GRAS 163 erLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nses 252
                         +rL  fA+++g pf+f+    ++ e++++++L++ +gEal+ n++lql ++  +  ++     ++L+  k+l+P+++ +ve+e+   +++ 
  Potri.005G175300.1 290 RRLVAFAASIGQPFSFHQCRLDSDETFRPSALKLVRGEALVMNCMLQLPHFSYRAPDSVA---SFLSGAKTLNPRLIAMVEEEVGPiGDGG 377
                         ******************9999*****************************855555555...9*******************9988**** PP

                GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                         F+ rf+++l++ysal+dslea++p + ++r+ vEr++lg++i   +a   ++   r e   +W erl ++GF+p+++s  + +qaklll  
  Potri.005G175300.1 378 FVSRFMDSLHHYSALYDSLEAGFPMQGRARALVERVFLGPRIAGSLARIYSA---RGEDGCSWGERLAAVGFQPIKISFANHCQAKLLLGL 465
                         ***************************************************9...888888****************************** PP

                GRAS 344 vksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                         ++ dgyrvee  s+ lvlgWk+r+L+s+S W+
  Potri.005G175300.1 466 FN-DGYRVEELaSNRLVLGWKSRRLLSASIWT 496
                         **.******876999****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.81182476IPR005202Transcription factor GRAS
PfamPF035144.7E-100108496IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MAMAIDGAKF ELDFSSYSST TTTTTPTTST ENDHGCNWND WSPMVDWEAL SGAQDDFQDL  60
IDSMMDDGAL MNQSIRLTPD TSNSMSTSDT MLVDEETSCS DDLKGLRLVH LLMAAAEALT  120
GLNKNRDLAR VILVRLKELV SPNDGTNMER LAAYFTDALQ GLLEGSGSIH SNKHLSGTNN  180
GPYHHHHRDD PQHHHHQSDV LAAFQLLQDM SPYVKFGHFT ANQAILEAVA DDRRIHIVDY  240
DIMEGIQWAS LMQALVSRKD GPPTPHLRIT ALSRGGSGRR SIGTVQETGR RLVAFAASIG  300
QPFSFHQCRL DSDETFRPSA LKLVRGEALV MNCMLQLPHF SYRAPDSVAS FLSGAKTLNP  360
RLIAMVEEEV GPIGDGGFVS RFMDSLHHYS ALYDSLEAGF PMQGRARALV ERVFLGPRIA  420
GSLARIYSAR GEDGCSWGER LAAVGFQPIK ISFANHCQAK LLLGLFNDGY RVEELASNRL  480
VLGWKSRRLL SASIWTSPSD PDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-5211649926381Protein SCARECROW
5b3h_D2e-5211649926381Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots and leaves. {ECO:0000269|PubMed:15961668}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G175300.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306621.20.0nodulation-signaling pathway 2 protein
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A2K2AI350.0A0A2K2AI35_POPTR; Uncharacterized protein
STRINGPOPTR_0005s15900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62643152
Representative plantOGRP68391319
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-163GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]