PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G171300.2
Common NamePOPTR_0005s16320g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 593aa    MW: 65318.9 Da    PI: 5.5467
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G171300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.14.6e-25126227199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+ltpsd+++ g +++p+ +a+++        +++ +  tlt++d +g sW++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF+ 
  Potri.005G171300.2 126 FAKILTPSDANNGGGFSVPRFCADSIfpplnyqAEPPVQ--TLTVTDIHGISWDFRHIYRGTPRRHLLTTGWSKFVNNKKLIAGDSVVFM- 213
                         89*********************999****985444444..9************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++ ++e++++v+r+
  Potri.005G171300.2 214 -RNLKGEMFIGVRRA 227
                         .568999*****996 PP
2Auxin_resp87.42.8e-29271355183
          Auxin_resp   1 aahaastksvFevvYnPrast.seFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         a++ a+++ +F+vvY+Pra++ s+Fvv++e ve+al v +++GmR+kma+etedss+ ++ +Gtv+g+   d+  W++S+Wr+L+
  Potri.005G171300.2 271 AVEMAAKGLPFDVVYYPRAGWySDFVVRAEAVEAALGVFWTAGMRVKMAMETEDSSRMTWfQGTVSGTGLPDSGAWRGSPWRMLQ 355
                         6788999************9779************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.3E-34118230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-30120234IPR015300DNA-binding pseudobarrel domain
CDDcd100171.53E-20126226No hitNo description
PfamPF023621.4E-22126227IPR003340B3 DNA binding domain
SMARTSM010199.5E-22126228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.661126228IPR003340B3 DNA binding domain
PfamPF065072.9E-27271355IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MPQLTELSRV DPRIWRACAG SSVQIPTINS RVYYFPQGHL EQSSSSTAPH PPFLSNLALS  60
KPLISCQISA VDFLADPVTD EVFIRLLLLP LNNHSCNLPL SFLEPSRSEG GGVNDVDDDE  120
NKILAFAKIL TPSDANNGGG FSVPRFCADS IFPPLNYQAE PPVQTLTVTD IHGISWDFRH  180
IYRGTPRRHL LTTGWSKFVN NKKLIAGDSV VFMRNLKGEM FIGVRRAVRL NNSARWREQI  240
AGGGGEGKVK VEEGFSMSGR GRLSQEAVAE AVEMAAKGLP FDVVYYPRAG WYSDFVVRAE  300
AVEAALGVFW TAGMRVKMAM ETEDSSRMTW FQGTVSGTGL PDSGAWRGSP WRMLQITWDE  360
PEVLQNAKRV SPWQVEFVAT TPQLQAAFPP MKKLRYPNDS RFLTDGELFF PMSDLTNSTM  420
GHTNASMLNY STFPAGMQGA RQDPFSTFGL SNFISENAPQ VFSDRAFGNN LVPKMKRMPS  480
EMNIGSLQSE NLSPESQSSA YSFGIGFVGN RGFNPKKVGI NSIQLFGKII HMDQPVENGF  540
DDVGFMDDSS KCCNETEGVD ALELSLTSSY TELLNRIDAQ CQRASPVEAC PT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-671037651388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.5420.0leaf
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G171300.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307409.20.0auxin response factor 17
RefseqXP_024457743.10.0auxin response factor 17
RefseqXP_024457744.10.0auxin response factor 17
SwissprotQ84WU60.0ARFQ_ARATH; Auxin response factor 17
TrEMBLB9H7880.0B9H788_POPTR; Auxin response factor
STRINGPOPTR_0005s16320.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.10.0auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]