PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G170500.1 | ||||||||
Common Name | POPTR_0005s16400g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bZIP | ||||||||
Protein Properties | Length: 361aa MW: 40593.8 Da PI: 6.8518 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 38.9 | 1.9e-12 | 74 | 115 | 2 | 43 |
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 +++k +rr+++NReAAr+sR+RKka++++Le +L + + Potri.005G170500.1 74 PADKIQRRLAQNREAARKSRLRKKAYVQQLESSRMKLAQLEQ 115 57999**************************86555544443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.6E-9 | 70 | 121 | No hit | No description |
SMART | SM00338 | 9.1E-7 | 73 | 133 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.6E-9 | 75 | 115 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.151 | 75 | 119 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.32E-7 | 77 | 119 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 80 | 95 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 5.2E-30 | 163 | 239 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MSSTSTQIAA LRGMGIYEPF NQISSWAHAF RDDGSLNIGP STIVQVDAGL DDKSEHVSHE 60 SMEPYRSDQE AHKPADKIQR RLAQNREAAR KSRLRKKAYV QQLESSRMKL AQLEQELERA 120 RHQGAYLGSA SNSSHLGFSG TVNPGIAAFE MEYGHWVEEQ HKQISELRKA LQAHITDIEL 180 RILVENGLNH YNNLFRMKAD AAKADVFYLI SGKWRTSVER FFQWIGGFRP SELLNVLMSQ 240 LEPLTDQQLA DVCNLRQSSQ QAEDALTQGI DKLQQTLSQS IAVDVMGVGG YGQMADDMEK 300 LEALEGFVNQ ADHLRQQTLQ HMSRILTMRQ AARGLLALGE YFHRLRALSS LWAACPREPT 360 * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.11053 | 0.0 | bud| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269|PubMed:12953119}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00247 | DAP | Transfer from AT1G77920 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.005G170500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF145013 | 0.0 | EF145013.1 Populus trichocarpa clone WS0111_I20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002306598.1 | 0.0 | transcription factor TGA7 | ||||
Swissprot | Q93ZE2 | 1e-165 | TGA7_ARATH; Transcription factor TGA7 | ||||
TrEMBL | B9H780 | 0.0 | B9H780_POPTR; BZIP family protein | ||||
STRING | POPTR_0005s16400.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1096 | 34 | 104 | Representative plant | OGRP2679 | 11 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77920.1 | 1e-167 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G170500.1 |
Entrez Gene | 7469115 |
Publications ? help Back to Top | |||
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