PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G161500.3 | ||||||||
Common Name | POPTR_0005s17390g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 251aa MW: 29067.3 Da PI: 6.1787 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.7 | 4.2e-18 | 57 | 110 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q+++Le+ Fe ++++ e++ +LA++l L+ rqV +WFqNrRa++k Potri.005G161500.3 57 KKRRLTLHQVKALEKNFEVDNKLVPERKLKLAEELCLQPRQVAIWFQNRRARWK 110 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 119 | 2.6e-38 | 56 | 148 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ +qvk+LE++Fe ++kL perK +la+eL lqprqva+WFqnrRAR+ktkqlE+dy +Lk++y+al+ + ++Le+++e+L++++ Potri.005G161500.3 56 EKKRRLTLHQVKALEKNFEVDNKLVPERKLKLAEELCLQPRQVAIWFQNRRARWKTKQLERDYGTLKANYEALNLDYSNLEQKNEALAQKV 146 69***************************************************************************************99 PP HD-ZIP_I/II 92 ke 93 ke Potri.005G161500.3 147 KE 148 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.698 | 52 | 112 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.87E-18 | 54 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.3E-15 | 55 | 116 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.27E-14 | 57 | 113 | No hit | No description |
Pfam | PF00046 | 2.1E-15 | 57 | 110 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-18 | 59 | 119 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 87 | 110 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 3.0E-14 | 112 | 153 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MKRFNSSDSL AAFISITSSK EDRTQNTNQG YSRDFQAMLD SLEEEDYIEE ANLGSEKKRR 60 LTLHQVKALE KNFEVDNKLV PERKLKLAEE LCLQPRQVAI WFQNRRARWK TKQLERDYGT 120 LKANYEALNL DYSNLEQKNE ALAQKVKELK AKLREEISDN NASVHSQNHD FSEHKNSSAV 180 TKDHSNVSSS NELMNCFNLT DSRAILGNRY QVYQPHLMKL EEQSLFSAEE SCNFFSVDQA 240 PTLHCYFPEQ * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 104 | 112 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.12047 | 1e-163 | bud| catkin| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.005G161500.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006383504.1 | 0.0 | homeobox-leucine zipper protein ATHB-6 isoform X1 | ||||
TrEMBL | U5GG67 | 0.0 | U5GG67_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s17390.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 2e-58 | homeobox protein 16 |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G161500.3 |
Entrez Gene | 7486577 |