PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G161500.2
Common NamePOPTR_0005s17390g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 265aa    MW: 30652 Da    PI: 6.0575
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G161500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.6e-1856109356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k++++t +q+++Le+ Fe ++++  e++ +LA++l L+ rqV +WFqNrRa++k
  Potri.005G161500.2  56 KKRRLTLHQVKALEKNFEVDNKLVPERKLKLAEELCLQPRQVAIWFQNRRARWK 109
                         56689************************************************9 PP
2HD-ZIP_I/II118.82.9e-3855147193
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         ekkrrl+ +qvk+LE++Fe ++kL perK +la+eL lqprqva+WFqnrRAR+ktkqlE+dy +Lk++y+al+ + ++Le+++e+L++++
  Potri.005G161500.2  55 EKKRRLTLHQVKALEKNFEVDNKLVPERKLKLAEELCLQPRQVAIWFQNRRARWKTKQLERDYGTLKANYEALNLDYSNLEQKNEALAQKV 145
                         69***************************************************************************************99 PP

         HD-ZIP_I/II  92 ke 93 
                         ke
  Potri.005G161500.2 146 KE 147
                         87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.69851111IPR001356Homeobox domain
SuperFamilySSF466893.17E-1853113IPR009057Homeodomain-like
SMARTSM003892.3E-1554115IPR001356Homeobox domain
PfamPF000462.3E-1556109IPR001356Homeobox domain
CDDcd000861.42E-1456112No hitNo description
Gene3DG3DSA:1.10.10.605.2E-1858118IPR009057Homeodomain-like
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
PfamPF021833.2E-14111152IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MKRFNSSDSL AAFISITSSK DRTQNTNQGY SRDFQAMLDS LEEEDYIEEA NLGSEKKRRL  60
TLHQVKALEK NFEVDNKLVP ERKLKLAEEL CLQPRQVAIW FQNRRARWKT KQLERDYGTL  120
KANYEALNLD YSNLEQKNEA LAQKVKELKA KLREEIVDSS HSVKEEYHVS ESDNNASVHS  180
QNHDFSEHKN SSAVTKDHSN VSSSNELMNC FNLTDSRAIL GNRYQVYQPH LMKLEEQSLF  240
SAEESCNFFS VDQAPTLHCY FPEQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103111RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.120470.0bud| catkin| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G161500.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024456621.10.0homeobox-leucine zipper protein ATHB-6 isoform X2
TrEMBLA0A2K2AHH80.0A0A2K2AHH8_POPTR; Uncharacterized protein
STRINGPOPTR_0005s17390.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.13e-59homeobox protein 16