PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G146500.1
Common NamePOPTR_0005s19020g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 408aa    MW: 44242.1 Da    PI: 5.2815
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G146500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.3e-10249297355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Potri.005G146500.1 249 NSHSLAERVRREKISERMRMLQELVPGC----NKITGKAVMLDEIINYVQSLQ 297
                         58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.38E-11244301No hitNo description
SuperFamilySSF474594.71E-17244313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.567246296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-17247313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-7249297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-10252302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MDGSGDNNGD LGYQNRVESV MKCPSSGMNT NPFYVSAWDP VVSLSQLGNF GGSSTGSQSE  60
FSNSPFPIVM ENPGISNTCH LVHYPSDSGF VELVPKFPGF GSGNFSEMVG SVGLTECGQI  120
VNAGCPPNYK EANNESTAHG AQREEDQQLS EETTIGALPN GKRRRLVAES NSPFDPNKNA  180
EGEFQKDPSG ESSDIAKELD EKKQKIEQNC SANLRGKQVA KQAKDNPQSG EAPKDDYIHV  240
RARRGQATNS HSLAERVRRE KISERMRMLQ ELVPGCNKIT GKAVMLDEII NYVQSLQQQV  300
EFLSMKLATV NPELYNDVEK IQSKDILHSR GGNAAILGFS PGINSHQYSH GIFQPGIPVI  360
LNSNPQFSPA HHAVLDNELQ SFFQMGFDSS SAVDSLGPNA GHLKPEL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161165KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G146500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306505.10.0transcription factor bHLH74 isoform X1
TrEMBLB9H6N30.0B9H6N3_POPTR; Uncharacterized protein
STRINGPOPTR_0005s19020.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75853345
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.12e-87bHLH family protein