PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G137600.3 | ||||||||
Common Name | POPTR_0005s18090g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 457aa MW: 51341 Da PI: 9.2688 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.4 | 3e-19 | 105 | 195 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k l++s+v + ++ lp +f+++h + ++t+tl+de g+++++k+i k++ l++GW++F+ a++L egD +vF+l+g+ + Potri.005G137600.3 105 FVKSLVRSHVASCFWMGLPGTFCRAHlPS---VDTTVTLQDECGKEFKMKYIAYKTG----LSAGWRQFCVAHQLFEGDALVFQLTGSCT- 187 89************************533...3569***************666665....9**********************998433. PP ..EEEEE-S CS B3 91 elvvkvfrk 99 l+v ++r+ Potri.005G137600.3 188 -LKVYIIRA 195 .69999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-20 | 98 | 196 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.08E-23 | 99 | 196 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.18E-23 | 103 | 194 | No hit | No description |
Pfam | PF02362 | 4.1E-17 | 105 | 195 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.1E-20 | 105 | 196 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.014 | 105 | 196 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 457 aa Download sequence Send to blast |
MSGRVKKEVE ETDFIKPLLF NKEQLKSVKD GKQKSPMEAT EKHLKIKRRY SDPKLKFVIS 60 GHAGKCIWQN KAPVQRSTTV GDGKSSAMIR AEEVQSNLEP AFPSFVKSLV RSHVASCFWM 120 GLPGTFCRAH LPSVDTTVTL QDECGKEFKM KYIAYKTGLS AGWRQFCVAH QLFEGDALVF 180 QLTGSCTLKV YIIRANDLTE VDDSAEMKTA ACKSSKRKRP RSLPQAVVQK KNKKSGQLRL 240 SVPQAGQPAE QSENDSEEVG SEVLEGFKLS LPAVHFKDIK SFEDFNILVD GLVLDSELSE 300 DIRNKYYKLC CNQNAFLHDN LIKGVNFKLI AGIISETVNI ADAMRACTLT TSRDKFATWD 360 KALKASELFG MNVGFLRARL SRLLSLAFDS EGATKTRRYL EARFERVLTE DEIKSLEAKL 420 VELKEAYERY GANVERLKSK AEGYDLKFQE QVLAPW* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.005G137600.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024457977.1 | 0.0 | B3 domain-containing protein Os01g0234100 isoform X2 | ||||
TrEMBL | A0A2K2AGF9 | 0.0 | A0A2K2AGF9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s18090.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 1e-37 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G137600.3 |
Entrez Gene | 7489729 |