PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G137600.1
Common NamePOPTR_0005s18090g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 476aa    MW: 53283.4 Da    PI: 9.101
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G137600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.33.2e-19107197199
                         EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                         f+k l++s+v +  ++ lp +f+++h  +    ++t+tl+de g+++++k+i  k++    l++GW++F+ a++L egD +vF+l+g+ + 
  Potri.005G137600.1 107 FVKSLVRSHVASCFWMGLPGTFCRAHlPS---VDTTVTLQDECGKEFKMKYIAYKTG----LSAGWRQFCVAHQLFEGDALVFQLTGSCT- 189
                         89************************533...3569***************666665....9**********************998433. PP

                         ..EEEEE-S CS
                  B3  91 elvvkvfrk 99 
                          l+v ++r+
  Potri.005G137600.1 190 -LKVYIIRA 197
                         .69999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-20100198IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-23101198IPR015300DNA-binding pseudobarrel domain
CDDcd100176.73E-24105196No hitNo description
SMARTSM010192.1E-20107198IPR003340B3 DNA binding domain
PROSITE profilePS5086313.014107198IPR003340B3 DNA binding domain
PfamPF023624.4E-17107197IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MSGRVKKEVE ETDFIKPLLF NKEQLKSVKD GKQKSPMEAT EKHLKIKRRY SDPKLKFVIS  60
GHAGKCICCR QNKAPVQRST TVGDGKSSAM IRAEEVQSNL EPAFPSFVKS LVRSHVASCF  120
WMGLPGTFCR AHLPSVDTTV TLQDECGKEF KMKYIAYKTG LSAGWRQFCV AHQLFEGDAL  180
VFQLTGSCTL KVYIIRANDL TEVDGALCLL NLDAQIKQNV ADSAEMKTAA CKSSKRKRPR  240
SLPQAVVQKK NKKSGQLRLS VPQAGQPAEQ SENDSEEVGS EVLEGFKLSL PAVHFKDIKS  300
FEDFNILVDG LVLDSELSED IRNKYYKLCC NQNAFLHDNL IKGVNFKLIA GIISETVNIA  360
DAMRACTLTT SRDKFATWDK ALKASELFGM NVGFLRARLS RLLSLAFDSE GATKTRRYLE  420
ARFERVLTED EIKSLEAKLV ELKEAYERYG ANVERLKSKA EGYDLKFQEQ VLAPW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G137600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024457976.10.0B3 domain-containing protein Os01g0234100 isoform X1
TrEMBLA0A2K2AGF30.0A0A2K2AGF3_POPTR; Uncharacterized protein
STRINGPOPTR_0005s18090.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Representative plantOGRP7667818
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.18e-38B3 family protein