PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G126100.1
Common NamePOPTR_0005s12760g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 205aa    MW: 23702 Da    PI: 9.4759
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G126100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.42.8e-1949102457
                         -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
            Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                         ++++++eq++ Le  F  ++++ +e++ +LA+ lgL+ rqV vWFqNrRa++k+
  Potri.005G126100.1  49 KRKLSAEQVNFLEMNFGDEHKLETERKDKLASDLGLDPRQVAVWFQNRRARWKN 102
                         45899***********************************************95 PP
2HD-ZIP_I/II119.61.7e-3848139293
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                         +kr+ls+eqv++LE++F  e+kLe+erK +la++Lgl+prqvavWFqnrRAR+k+k+lE++y++Lk+a+++++ ++++Le+ev +L+e+l+
  Potri.005G126100.1  48 RKRKLSAEQVNFLEMNFGDEHKLETERKDKLASDLGLDPRQVAVWFQNRRARWKNKKLEEEYTKLKTAHESIVVQKCQLESEVLKLKEQLS 138
                         8***************************************************************************************997 PP

         HD-ZIP_I/II  93 e 93 
                         +
  Potri.005G126100.1 139 R 139
                         5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.21243103IPR001356Homeobox domain
SMARTSM003892.8E-1846107IPR001356Homeobox domain
CDDcd000861.38E-1348104No hitNo description
SuperFamilySSF466896.84E-1748110IPR009057Homeodomain-like
PfamPF000461.8E-1649102IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.3E-2050110IPR009057Homeodomain-like
PRINTSPR000311.5E-57483IPR000047Helix-turn-helix motif
PROSITE patternPS00027078101IPR017970Homeobox, conserved site
PRINTSPR000311.5E-58399IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MNHKVEDHIA LISQLYPGLY TQMVPKQGES KPRRRRKKNT GEGVSGARKR KLSAEQVNFL  60
EMNFGDEHKL ETERKDKLAS DLGLDPRQVA VWFQNRRARW KNKKLEEEYT KLKTAHESIV  120
VQKCQLESEV LKLKEQLSRT EKEIQRLSDR ADRVSTNSPS SSLSMAIEHP FLGEFAVLEG  180
YGDAFYMPPE NNYIPGMEWI SQYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13550RKKNTGEGVSGARKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.104780.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G126100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383237.11e-152homeobox-leucine zipper protein ATHB-40
SwissprotQ9ZU703e-75ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLB9MXR71e-151B9MXR7_POPTR; Uncharacterized protein
STRINGPOPTR_0005s12760.11e-151(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47893257
Representative plantOGRP37761025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.12e-67homeobox protein 21
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]