PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G125600.2 | ||||||||
Common Name | POPTR_0005s12710g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 506aa MW: 53017.4 Da PI: 7.9712 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 68 | 90 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Potri.005G125600.2 68 FVCEICNKGFQRDQNLQLHRRGH 90 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.2 | 0.0012 | 144 | 166 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + Potri.005G125600.2 144 WKCDKCSKKYAVQSDWKAHSKIC 166 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.86E-7 | 67 | 90 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-5 | 67 | 90 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 8.1E-5 | 68 | 90 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.949 | 68 | 90 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 68 | 90 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 70 | 90 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 230 | 109 | 139 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 7.5E-4 | 132 | 165 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.86E-7 | 139 | 164 | No hit | No description |
SMART | SM00355 | 150 | 144 | 164 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009937 | Biological Process | regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010029 | Biological Process | regulation of seed germination | ||||
GO:0010431 | Biological Process | seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence Send to blast |
MPVDLDNSPA ASGEASVSSS GYQPSQQQTP SKTVAIAKKK RNLPGMPVDP EAEVIALSPK 60 TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRS SNEVKKRVYV CPETTCVHHD 120 PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KKYAVQSDWK AHSKICGTRE YKCDCGTLFS 180 RRDSFITHRA FCDALADESA RAQTQTPNPN PNHNPESDPK VQVDSSPPPA PLPPPVAPDL 240 GPELPDNPTQ IIEEAPARAP MPATVTAGFN GSCSSSTSSS SNGSSTSSVF ASLFASSTAS 300 GSLQTPQTPA FTDLIHAMAH PDRPTDLAPS SSAEPISLCL STNHGSSIFG TAGQERRQYA 360 PPPQPAISAT ALLQKAAQMG AAATNASLLR GLGIVSSSPS STQQDNTQWG HRQMEPENAS 420 LAAGLGLGLP CDGGSGLNEL MMGTPSIFGP KHATLDFLEL GMAAGGNPSG GLSALITSIG 480 GGLDVAAAAA SFGGGEFSGK DMGRS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-34 | 140 | 208 | 3 | 71 | Zinc finger protein JACKDAW |
5b3h_F | 1e-34 | 140 | 208 | 3 | 71 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.12952 | 0.0 | bud| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269|PubMed:21571950}. | |||||
Uniprot | TISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269|PubMed:21571950}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00592 | DAP | Transfer from AT5G66730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.005G125600.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024457502.1 | 0.0 | protein indeterminate-domain 2 isoform X1 | ||||
Swissprot | Q9LVQ7 | 1e-180 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | B9MXR2 | 0.0 | B9MXR2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s12710.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-142 | indeterminate(ID)-domain 2 |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G125600.2 |
Entrez Gene | 18099302 |
Publications ? help Back to Top | |||
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