PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G125600.1
Common NamePOPTR_0005s12710g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 531aa    MW: 55422.2 Da    PI: 7.9712
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G125600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-056789123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C+k F r  nL+ H r H
  Potri.005G125600.1 67 FVCEICNKGFQRDQNLQLHRRGH 89
                        89*******************88 PP
2zf-C2H211.10.0012143165123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k +  +s+ k H + +
  Potri.005G125600.1 143 WKCDKCSKKYAVQSDWKAHSKIC 165
                         58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-56689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.41E-76689No hitNo description
SMARTSM003550.0176789IPR015880Zinc finger, C2H2-like
PfamPF121718.5E-56789IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9496789IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM00355230108138IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.8E-4131164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.41E-7138163No hitNo description
SMARTSM00355150143163IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MPVDLDNSPA ASGEASVSSS GYQPSQQQTP SKTVAIAKKK RNLPGMPDPE AEVIALSPKT  60
LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLRQRSS NEVKKRVYVC PETTCVHHDP  120
SRALGDLTGI KKHFCRKHGE KKWKCDKCSK KYAVQSDWKA HSKICGTREY KCDCGTLFSR  180
RDSFITHRAF CDALADESAR AQTQTPNPNP NHNPESDPKV QVDSSPPPAP LPPPVAPDLG  240
PGLSQAPLGL AQSTGMTPSP VLAIQSPELP DNPTQIIEEA PARAPMPATV TAGFNGSCSS  300
STSSSSNGSS TSSVFASLFA SSTASGSLQT PQTPAFTDLI HAMAHPDRPT DLAPSSSAEP  360
ISLCLSTNHG SSIFGTAGQE RRQYAPPPQP AISATALLQK AAQMGAAATN ASLLRGLGIV  420
SSSPSSTQQD NTQWGHRQME PENASLAAGL GLGLPCDGGS GLNELMMGTP SIFGPKHATL  480
DFLELGMAAG GNPSGGLSAL ITSIGGGLDV AAAAASFGGG EFSGKDMGRS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-35139207371Zinc finger protein JACKDAW
5b3h_F5e-35139207371Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.129520.0bud| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269|PubMed:21571950}.
UniprotTISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269|PubMed:21571950}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G125600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024457504.10.0protein indeterminate-domain 2 isoform X2
SwissprotQ9LVQ70.0IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A2K2AFV50.0A0A2K2AFV5_POPTR; Uncharacterized protein
STRINGPOPTR_0005s12710.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-149C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]