PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G123800.1
Common NamePOPTR_0005s12520g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 590aa    MW: 65076.4 Da    PI: 4.9386
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G123800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3572.7e-1092245893374
                GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                         ++L+ecA+ v+s+   +a + L r +e +s++gdp +R+ +yf+++L +r+a    el +  +  +t+   s+e +  +k++++++P+ kf
  Potri.005G123800.1 224 KALVECAQLVESKA-DQAVKSLIRFKESVSENGDPGERVGFYFVKGLCRRVAV--GELDDLKNFHQTT---SEEFTLCYKALNDACPYSKF 308
                         79********9965.566677889****************************8..4444444555554...999***************** PP

                GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                         +hltaNqaIlea+e+++++Hi+Df+i qG+QW+aLlqaLa+R++g+p ++Ri g+ +p  g   + +l +tg+rL +fA+ l+++fef++ 
  Potri.005G123800.1 309 AHLTANQAILEATEKASKIHIVDFGIVQGIQWAALLQALATRSAGKPvRIRISGIPAPVLGknPAASLLATGNRLLDFAKLLDLNFEFEP- 398
                         *******************************************88777*********9988889999***********************. PP

                GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                         + + +++l+ + +rv+p+E+laVn++lql++ll e+    +   + Lk+ ksl+P++v++ e e+++n+  +l+rf +al+yy+a+f+sl+
  Potri.005G123800.1 399 ILTPIQELNESCFRVEPDEVLAVNFMLQLYNLLGETPGAVE---TALKMAKSLNPRIVTLGEYEVSLNRVGYLTRFKNALRYYTAVFESLD 486
                         799******************************77666666...9********************************************** PP

                GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lg 361
                          +++r+s+er  vEr llgr+i+ vv   g  rrer+e +e+Wr  +e++GF++v+ls++a++qak ll +++ s  y++++++  ++ l 
  Potri.005G123800.1 487 PNMSRDSQERLQVERLLLGRRISGVVGPDGI-RRERMEDKEQWRVLMESSGFESVSLSHYAMSQAKILLWNYNsSTMYSLDDSQPGFLtLA 576
                         *******************************.59***************************************8888****99877777** PP

                GRAS 362 WkdrpLvsvSaWr 374
                         W++ pL++vS+Wr
  Potri.005G123800.1 577 WNEVPLLTVSSWR 589
                         ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.316196567IPR005202Transcription factor GRAS
PfamPF035149.5E-107224589IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIK QKQQQEQQQQ QSHHPQQQFL GLNPFSLNPW PSTTMSANPN  60
LGYGLSGPAA FSDPFQSGPD TGDPPGFSFS NMEHHHSSGF RFPDFTGAGG EFDSDEWMDS  120
LMNGGDSTDS SNLPSGCDAW QNNADFGIYR SDPFNTSPSR LTVGCSPPSD LNRVISNSLW  180
ADPSPPQEIK PKTSPPQQPP PTVKNEVVVG SKEIVELSSS PVLKALVECA QLVESKADQA  240
VKSLIRFKES VSENGDPGER VGFYFVKGLC RRVAVGELDD LKNFHQTTSE EFTLCYKALN  300
DACPYSKFAH LTANQAILEA TEKASKIHIV DFGIVQGIQW AALLQALATR SAGKPVRIRI  360
SGIPAPVLGK NPAASLLATG NRLLDFAKLL DLNFEFEPIL TPIQELNESC FRVEPDEVLA  420
VNFMLQLYNL LGETPGAVET ALKMAKSLNP RIVTLGEYEV SLNRVGYLTR FKNALRYYTA  480
VFESLDPNMS RDSQERLQVE RLLLGRRISG VVGPDGIRRE RMEDKEQWRV LMESSGFESV  540
SLSHYAMSQA KILLWNYNSS TMYSLDDSQP GFLTLAWNEV PLLTVSSWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1502195891375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.103520.0bud| catkin
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G123800.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ5118630.0KJ511863.1 Populus euphratica GRAS/SCL transcription factor (SCL7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383208.10.0SCARECROW-LIKE protein 7
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLB9MXP60.0B9MXP6_POPTR; Uncharacterized protein
STRINGPOPTR_0005s12520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62803449
Representative plantOGRP67991519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein