PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.005G113400.2

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 319aa MW: 35288.3 Da PI: 6.7856

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.005G113400.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.3	3.7e-10	62	110	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ + rE+ RRd++N+ f eL + l ++ +K++Ka+iL+ +++ +k+L Potri.005G113400.2 62 KVQKADREKLRRDNLNEQFLELGTTLDPD----RPKNDKATILTDTIQVLKDL 110 677889******************997....79*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.665	60	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.55E-13	61	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.8E-11	61	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.06E-6	61	114	No hit	No description
Pfam	PF00010	6.2E-8	62	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.4E-7	66	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MDQWNTRNDY AQSFVAATTN MVPSNSLHSF PPRSSTRLQN SALEPRQRQE VEVKNPIAVA 60 KKVQKADREK LRRDNLNEQF LELGTTLDPD RPKNDKATIL TDTIQVLKDL TAEVNRLKAE 120 CATLSEETHE LMQEKNELRE EKASLKADTE NLNAQYHQST RAMFPWAAVD PSVVIPPYSY 180 QVPVPVPPGP ISMHPSLQPF VFFGNQNPGA IASPCSTFIP YPTANHPNDQ PPAQYASGSQ 240 FSSKQDSRTK STDHEGGRNK ERCNDSSDVA TDLELKMPGS SAQQDISSGE KKGKQCQRKE 300 RIITNVSSSC SSSSGMLL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.2768	0.0	bud\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.005G113400.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU277412	9e-65	GU277412.1 Populus balsamifera isolate INU03 haplotype A basic helix-loop-helix family protein gene, partial sequence.
GenBank	GU277413	9e-65	GU277413.1 Populus balsamifera isolate INU03 haplotype B basic helix-loop-helix family protein gene, partial sequence.
GenBank	GU277414	9e-65	GU277414.1 Populus balsamifera isolate KUU07 haplotype A basic helix-loop-helix family protein gene, partial sequence.
GenBank	GU277415	9e-65	GU277415.1 Populus balsamifera isolate KUU07 haplotype B basic helix-loop-helix family protein gene, partial sequence.
GenBank	GU277416	9e-65	GU277416.1 Populus balsamifera isolate LOV02 haplotype A basic helix-loop-helix family protein gene, partial sequence.
GenBank	GU277417	9e-65	GU277417.1 Populus balsamifera isolate LOV02 haplotype B basic helix-loop-helix family protein gene, partial sequence.
GenBank	GU277418	9e-65	GU277418.1 Populus balsamifera isolate MGR10 haplotype A basic helix-loop-helix family protein gene, partial sequence.
GenBank	GU277419	9e-65	GU277419.1 Populus balsamifera isolate MGR10 haplotype B basic helix-loop-helix family protein gene, partial sequence.
GenBank	GU277420	9e-65	GU277420.1 Populus balsamifera isolate NWL07 haplotype A basic helix-loop-helix family protein gene, partial sequence.
GenBank	GU277421	9e-65	GU277421.1 Populus balsamifera isolate NWL07 haplotype B basic helix-loop-helix family protein gene, partial sequence.
GenBank	GU277422	9e-65	GU277422.1 Populus balsamifera isolate POR11 haplotype A basic helix-loop-helix family protein gene, partial sequence.
GenBank	GU277423	9e-65	GU277423.1 Populus balsamifera isolate POR11 haplotype B basic helix-loop-helix family protein gene, partial sequence.
GenBank	GU277424	9e-65	GU277424.1 Populus balsamifera isolate RNA13 haplotype A basic helix-loop-helix family protein gene, partial sequence.
GenBank	GU277425	9e-65	GU277425.1 Populus balsamifera isolate RNA13 haplotype B basic helix-loop-helix family protein gene, partial sequence.
GenBank	GU277426	9e-65	GU277426.1 Populus balsamifera isolate STL13 haplotype A basic helix-loop-helix family protein gene, partial sequence.
GenBank	GU277427	9e-65	GU277427.1 Populus balsamifera isolate STL13 haplotype B basic helix-loop-helix family protein gene, partial sequence.
GenBank	GU277428	9e-65	GU277428.1 Populus balsamifera isolate STO11 haplotype A basic helix-loop-helix family protein gene, partial sequence.
GenBank	GU277429	9e-65	GU277429.1 Populus balsamifera isolate STO11 haplotype B basic helix-loop-helix family protein gene, partial sequence.
GenBank	GU277430	9e-65	GU277430.1 Populus balsamifera isolate WHR03 haplotype A basic helix-loop-helix family protein gene, partial sequence.
GenBank	GU277431	9e-65	GU277431.1 Populus balsamifera isolate WHR03 haplotype B basic helix-loop-helix family protein gene, partial sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024456500.1	0.0	transcription factor bHLH121
Refseq	XP_024456502.1	0.0	transcription factor bHLH121
Swissprot	Q9LT23	1e-70	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A2K2AF88	0.0	A0A2K2AF88_POPTR; Uncharacterized protein
STRING	POPTR_0005s11550.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	1e-64	bHLH family protein

Link Out ? help Back to Top
Phytozome	Potri.005G113400.2

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]