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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Potri.005G095100.1 |
| Common Name | POPTR_0005s09790g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
GRAS |
| Protein Properties |
Length: 536aa MW: 60405.7 Da PI: 4.6036 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.005G095100.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 371.8 | 9e-114 | 157 | 528 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn...sseelaalklfsev 87
lv+lLl+cAea+s +d++la+++L+++ +sp gd++qR+ ++f+ +L+ rl++ + + +++ + +++ +e++ a++l++++
Potri.005G095100.1 157 LVHLLLACAEALSCRDTRLAETMLSQIWPSVSPWGDSLQRVSFCFAMGLKCRLSHlNNVNAHGTFTIGGAMDRSlivRAEKMEAFQLLHQA 247
68****************************************************9333333334444444444467789999999****** PP
GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
+P++ f++++aN+aI +a+++++ +HiiD+++++ lQWp+L++ LasRpegpp+lRiTg+ + ++ ele+ + La+ A++lg+++ef
Potri.005G095100.1 248 TPYIAFGFMAANEAICQAAQEKDSLHIIDLGMEHALQWPSLMRILASRPEGPPKLRITGLID--GHNLLELEASMKELAEEASSLGIRLEF 336
************************************************************99..5599*********************** PP
GRAS 179 nvlvak..rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
n+ v++ + l++e+L++++gEal Vn++++lh++++es + + ++L+++k+l+P++++vveq+a+hn++ Fl rf+e+l+yysa+
Potri.005G095100.1 337 NL-VSEpvSPLLLTTENLNLREGEALFVNSIMHLHKFVKESRGSLK---AILQAIKKLNPTLLTVVEQDANHNGPFFLGRFIESLHYYSAI 423
*9.56623445679************************88777666...9***************************************** PP
GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
fdslea+lpr+s +rik+E++ ++ ei+n++a eg++r+erhe++ +Wr++l++aGF+ + l+ ++qa+++l+ ++ dgy++ e+g+l
Potri.005G095100.1 424 FDSLEASLPRNSPQRIKMEKVQFSTEICNIIAYEGSNRIERHERADQWRRQLSRAGFQVMGLK--CMSQARMMLSVYGIDGYTLATEKGCL 512
***********************************************************9985..89************************ PP
GRAS 359 vlgWkdrpLvsvSaWr 374
+lgWk+rp++ +SaW+
Potri.005G095100.1 513 LLGWKGRPIMLASAWQ 528
***************6 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 536 aa
Download sequence Send
to blast |
MEGMNDWLSF SMHESLNHDL AIRRFCPARM ELEQGEECWE EITFSEIELL SPDDDSTSPP 60
HLADSEVDEL VDSFINVDQD GNKDDKSFEK DQDFNHLQDD HIEAFSMVND VFQDVPKMNI 120
EGDELEMSSS FEDLEAVSDM EPRVEDMTQG VDQGLHLVHL LLACAEALSC RDTRLAETML 180
SQIWPSVSPW GDSLQRVSFC FAMGLKCRLS HLNNVNAHGT FTIGGAMDRS LIVRAEKMEA 240
FQLLHQATPY IAFGFMAANE AICQAAQEKD SLHIIDLGME HALQWPSLMR ILASRPEGPP 300
KLRITGLIDG HNLLELEASM KELAEEASSL GIRLEFNLVS EPVSPLLLTT ENLNLREGEA 360
LFVNSIMHLH KFVKESRGSL KAILQAIKKL NPTLLTVVEQ DANHNGPFFL GRFIESLHYY 420
SAIFDSLEAS LPRNSPQRIK MEKVQFSTEI CNIIAYEGSN RIERHERADQ WRRQLSRAGF 480
QVMGLKCMSQ ARMMLSVYGI DGYTLATEKG CLLLGWKGRP IMLASAWQVH NLFPS*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC216770 | 0.0 | AC216770.1 Populus trichocarpa clone POP051-A24, complete sequence. |
