PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G087200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 365aa MW: 40018.6 Da PI: 6.7946 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.3 | 1.3e-20 | 164 | 213 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrd + + r++lg+f+tae Aa+a+++a+++++g Potri.005G087200.1 164 KYRGVRQRP-WGKWAAEIRDpF-----KaCRVWLGTFDTAEAAARAYDEAALRFRG 213 8********.**********66.....56*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.0E-33 | 163 | 222 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-14 | 164 | 213 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.409 | 164 | 221 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.52E-22 | 164 | 223 | No hit | No description |
SMART | SM00380 | 8.2E-37 | 164 | 227 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-22 | 164 | 222 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.8E-11 | 165 | 176 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-11 | 187 | 203 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0009749 | Biological Process | response to glucose | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MAVWLGSYSF SKSLHVQAKV ANKGDKIVKK EAGSVEEWPL PVMLSGLNRE REMSVMVTAL 60 THVVAGNVPA DDSDCISEAF PNNQDNCAHG DLSAKREREE GGGGSEEYKR HGRAFGDDFL 120 HGGSSSAGRA SGKSIITMTP AATRMAFTPV YEYNETCRDE PRRKYRGVRQ RPWGKWAAEI 180 RDPFKACRVW LGTFDTAEAA ARAYDEAALR FRGNKAKLNF PENVKLRPTP PNPIANQLTV 240 SDSPSSTGLL SVPTSTEAIV HSQALHHTQN REISREQVNQ PQLILGVGGY QRQPMSLYDQ 300 MFLSPPLVSS YPSMSSSTEY SDPMFLPAQQ PGEIMPATSS QSGGEEFQLP AWSDYSHYYT 360 SSSG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-22 | 163 | 224 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00584 | DAP | Transfer from AT5G64750 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.005G087200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002307142.2 | 0.0 | ethylene-responsive transcription factor ABR1 | ||||
TrEMBL | A0A3N7EX28 | 0.0 | A0A3N7EX28_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s08940.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4933 | 32 | 54 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33710.1 | 5e-21 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G087200.1 |