PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G082700.1
Common NamePOPTR_0005s08440g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 393aa    MW: 43541 Da    PI: 4.5505
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G082700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM71.42.4e-2291401128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkd 89 
                         l+pG+rF+Ptd+elv++yL +kv++  + ++  ++++diy ++P ++  + ++ + ++++fF++ +kk++t++ +++ a   ++W+   +d
  Potri.005G082700.1   9 LQPGYRFSPTDQELVQFYLYPKVTNPLFITSGPVRDCDIYAYQPLQIWnAFHRIQGEDVFFFTNLKKKSPTSHVTRKiAGGPATWHREDTD 99 
                         579*********************999888788**************73455558899*************9999995556789******* PP

                 NAM  90 kevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++ ++   + +++g++k + +   ++p  +   W+m ey+l
  Potri.005G082700.1 100 RAIGVAideHCSVTGIRKCFSYQ-STQPGQHGGGWTMYEYSL 140
                         ***99876666779*******97.677777899*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-248155IPR003441NAC domain
PROSITE profilePS5100527.4289155IPR003441NAC domain
PfamPF023653.3E-1611140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MDFSLPQTLQ PGYRFSPTDQ ELVQFYLYPK VTNPLFITSG PVRDCDIYAY QPLQIWNAFH  60
RIQGEDVFFF TNLKKKSPTS HVTRKIAGGP ATWHREDTDR AIGVAIDEHC SVTGIRKCFS  120
YQSTQPGQHG GGWTMYEYSL PSLSQVIVLC QLRRKDDNKS HTQTTKKRRR QADGVDDATN  180
TISQKARVGE GYHQQQITGF EAAAETESEI VYNGVRFDNL ESFSHQLFQD FDDDEMAVSS  240
VASTINVAAP TVSTSSCAEN LQPNKVVRID NDEEPSATEE DDDYHRELLR LLGLDGGSDL  300
AGGVPSIQSP PEADEVHSTP KGSTPVESLA TDADGYHLDA QVSGSSLSSG WRGSLSQQLP  360
QANPTCLVQE NEVEMIYINP FRMESPYDVS LL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152169RRKDDNKSHTQTTKKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G082700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2169130.0AC216913.1 Populus trichocarpa clone POP030-J10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306342.10.0NAC domain-containing protein 101
TrEMBLB9H5930.0B9H593_POPTR; Uncharacterized protein
STRINGPOPTR_0005s08440.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13633523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.11e-15NAC-domain protein 101