PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.005G064100.1

Common Name

POPTR_0005s06510g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 196aa MW: 22267 Da PI: 4.598

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.005G064100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	92.6	6.6e-29	10	127	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGf F+P+deel+ ++L +k++ +++ ++i+++++y +Pw+L+ ++ +e++wy+Fs+ + n+at +g+Wk +++ Potri.005G064100.1 10 LPPGFIFSPSDEELILHFLDRKASLLPCHP-DIIPDLGLYPQDPWQLEGRALWSENQWYYFSRVME--------NQATGNGFWKPLDIEEP 91 79***********************999.99**********977777899**9865........56899******** PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s+ g++vglkk Lv+ p+g++t+W+m+ey+l Potri.005G064100.1 92 IFSSsAGKKVGLKKYLVYC--IGPEGVETNWMMQEYHL 127 9878999*******9..6899*********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-38	9	155	IPR003441	NAC domain
PROSITE profile	PS51005	37.403	10	156	IPR003441	NAC domain
Pfam	PF02365	4.4E-18	11	127	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MGDHGCSGNL PPGFIFSPSD EELILHFLDR KASLLPCHPD IIPDLGLYPQ DPWQLEGRAL 60 WSENQWYYFS RVMENQATGN GFWKPLDIEE PIFSSSAGKK VGLKKYLVYC IGPEGVETNW 120 MMQEYHLCSS KSSGKSYKRK QKLDCSKWIL CRVYQREGSC SRSSNHSDDD DGTELSCLDE 180 MFLSMDDLDD ISFPN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-32	9	162	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-32	9	162	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-32	9	162	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-32	9	162	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	5e-32	9	162	19	174	NAC domain-containing protein 19
3swm_B	5e-32	9	162	19	174	NAC domain-containing protein 19
3swm_C	5e-32	9	162	19	174	NAC domain-containing protein 19
3swm_D	5e-32	9	162	19	174	NAC domain-containing protein 19
3swp_A	5e-32	9	162	19	174	NAC domain-containing protein 19
3swp_B	5e-32	9	162	19	174	NAC domain-containing protein 19
3swp_C	5e-32	9	162	19	174	NAC domain-containing protein 19
3swp_D	5e-32	9	162	19	174	NAC domain-containing protein 19
4dul_A	5e-32	9	162	16	171	NAC domain-containing protein 19
4dul_B	5e-32	9	162	16	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269\|PubMed:15923329, ECO:0000269\|PubMed:18069942}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.005G064100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU286151	1e-145	GU286151.1 Populus balsamifera isolate NWL07 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286152	1e-145	GU286152.1 Populus balsamifera isolate HAY07 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286153	1e-145	GU286153.1 Populus balsamifera isolate HAY07 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286154	1e-145	GU286154.1 Populus balsamifera isolate MGR10 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286155	1e-145	GU286155.1 Populus balsamifera isolate MGR10 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286156	1e-145	GU286156.1 Populus balsamifera isolate FRE01 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286157	1e-145	GU286157.1 Populus balsamifera isolate FRE01 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286158	1e-145	GU286158.1 Populus balsamifera isolate KUU07 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286159	1e-145	GU286159.1 Populus balsamifera isolate KUU07 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286160	1e-145	GU286160.1 Populus balsamifera isolate STL13 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286161	1e-145	GU286161.1 Populus balsamifera isolate STL13 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286162	1e-145	GU286162.1 Populus balsamifera isolate POR11 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286163	1e-145	GU286163.1 Populus balsamifera isolate POR11 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286164	1e-145	GU286164.1 Populus balsamifera isolate LOV02 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286166	1e-145	GU286166.1 Populus balsamifera isolate FBK13 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286168	1e-145	GU286168.1 Populus balsamifera isolate GAL12 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286170	1e-145	GU286170.1 Populus balsamifera isolate INU03 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286172	1e-145	GU286172.1 Populus balsamifera isolate RNA13 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286174	1e-145	GU286174.1 Populus balsamifera isolate STO11 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286176	1e-145	GU286176.1 Populus balsamifera isolate WHR03 haplotype A no apical meristem (NAM) family protein gene, partial sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002307034.3	1e-144	NAC domain-containing protein 104
Swissprot	Q8GWK6	3e-65	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A2K2ACF6	1e-142	A0A2K2ACF6_POPTR; Uncharacterized protein
STRING	POPTR_0005s06510.1	1e-143	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1736	33	95
Representative plant	OGRP4510	10	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	9e-66	xylem NAC domain 1

Link Out ? help Back to Top
Phytozome	Potri.005G064100.1
Entrez Gene	7479142

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]