PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G055300.1
Common NamePOPTR_0005s05700g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 354aa    MW: 39696.5 Da    PI: 10.2257
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G055300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.44.7e-31286343359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYeg+Hnh+
  Potri.005G055300.1 286 DEYSWRKYGQKPIKGSPHPRGYYKCSSLrGCPARKHVERCLEEPSMLIVTYEGDHNHS 343
                         9*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105337.3E-19237282IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.1E-33272343IPR003657WRKY domain
PROSITE profilePS5081129.138279345IPR003657WRKY domain
SuperFamilySSF1182901.57E-26282343IPR003657WRKY domain
SMARTSM007743.4E-37284344IPR003657WRKY domain
PfamPF031061.8E-26286342IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEEVEEAHKA AIESCNRVIG LLCQPKDQVQ GRNLMVETGE TVFKFKRVIS LLSTGLGHGR  60
VRKLKKFRSS LPQNIFLDSP NCKTILAPKP LQMVPPNFLE TPLGDMDAKS KLPVQIAQKM  120
FLENPVLELN SNTRPPLQIA QTKPPNFQFP QQHQQIQRVH FQQQQQQMKY QVDRVYSRSN  180
SGINLKFDGS TCAPTMSSTR SFISSLSMDG TVSNFDGDSF HLIGMPHSSD HISQQTRRKC  240
SGKGEDGNAK CASGGKCHCS KRRKLRVKRS IKVPAISNKV ADIPPDEYSW RKYGQKPIKG  300
SPHPRGYYKC SSLRGCPARK HVERCLEEPS MLIVTYEGDH NHSRLISSQS AHT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-192823421271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G055300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774450.0GQ377445.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 25 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006382812.10.0probable WRKY transcription factor 39
SwissprotQ9SR071e-128WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBLB9MZB90.0B9MZB9_POPTR; WRKY family protein
STRINGPOPTR_0005s05700.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Representative plantOGRP18171541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.11e-126WRKY DNA-binding protein 39
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]