PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.005G023700.1

Common Name

POPTR_0005s02350g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 485aa MW: 54628.3 Da PI: 7.7241

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.005G023700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.9	2.8e-17	58	142	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 + ++YAk +GF+ r ++s+k+k nge ++vC+keg+++++ k+ + r + r gC+ + ++++dg+w+++k++l+H He+ Potri.005G023700.1 58 YLQSYAKAIGFQWRYRTSRKNKSNGERCGVRMVCTKEGTNKPRGKS---PKYFRLSGREGCNVAMSSSLQSDGRWKISKIHLQHCHEI 142 5689*************************************999...88999******************************97 PP
2	FAR1	32.5	2.7e-10	195	272	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 f +YAk+vGF+ ++++s+k k++g++ +vCsk+ +r++ ++ + gC+ +l +++kdg+w+++k++l H He+ Potri.005G023700.1 195 FLFSYAKKVGFQWSIRTSRKDKNSGKTCGICMVCSKSKRRKQPNS-----------EGEGCDVSLCSTLQKDGQWKINKIHLRHCHEMD 272 6668*****************************9877666544...........589**************************96 PP
3	FAR1	47.6	5.5e-15	350	427	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++YAk vGF+ rk++s+k++++gei ++vC+kegkr + + + gC ++ +++k g+w+++k++leH+He+ Potri.005G023700.1 350 LCSYAKAVGFEWRKRTSRKNENSGEICGVRMVCNKEGKRGSLGP----------SMKKGCPVAVNSTLQKGGRWRINKINLEHSHEID 427 579**********************************99765..........5999*************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.6E-14	58	142	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	4.8E-7	195	272	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	2.9E-11	349	427	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MDELLRLSIG GAANSDVNIS GGEAAGPTSL PADGVDRNLL QPPYDGQTFG SLEEMVQYLQ 60 SYAKAIGFQW RYRTSRKNKS NGERCGVRMV CTKEGTNKPR GKSPKYFRLS GREGCNVAMS 120 SSLQSDGRWK ISKIHLQHCH EIDLNAVPLH MRQHLLELND RSGIEEEEEE ENEEEEEGKP 180 YDGQTFGSYA ELIQFLFSYA KKVGFQWSIR TSRKDKNSGK TCGICMVCSK SKRRKQPNSE 240 GEGCDVSLCS TLQKDGQWKI NKIHLRHCHE MDPNATPILR RWYLLALNGR MGIEEEEAKE 300 EGEEMEEGEG ETEQEEAGNS SLSNDIDRPS IDPLYNGQTF GSLQELIQYL CSYAKAVGFE 360 WRKRTSRKNE NSGEICGVRM VCNKEGKRGS LGPSMKKGCP VAVNSTLQKG GRWRINKINL 420 EHSHEIDPNV RPFLRRRHRS IPPQLRDPLV SNDRLGIEDE EERGRGGGRR SCTCCLGATS 480 RLKW*

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MDELLRLSIG GAANSDVNIS GGEAAGPTSL PADGVDRNLL QPPYDGQTFG SLEEMVQYLQ  60
SYAKAIGFQW RYRTSRKNKS NGERCGVRMV CTKEGTNKPR GKSPKYFRLS GREGCNVAMS  120
SSLQSDGRWK ISKIHLQHCH EIDLNAVPLH MRQHLLELND RSGIEEEEEE ENEEEEEGKP  180
YDGQTFGSYA ELIQFLFSYA KKVGFQWSIR TSRKDKNSGK TCGICMVCSK SKRRKQPNSE  240
GEGCDVSLCS TLQKDGQWKI NKIHLRHCHE MDPNATPILR RWYLLALNGR MGIEEEEAKE  300
EGEEMEEGEG ETEQEEAGNS SLSNDIDRPS IDPLYNGQTF GSLQELIQYL CSYAKAVGFE  360
WRKRTSRKNE NSGEICGVRM VCNKEGKRGS LGPSMKKGCP VAVNSTLQKG GRWRINKINL  420
EHSHEIDPNV RPFLRRRHRS IPPQLRDPLV SNDRLGIEDE EERGRGGGRR SCTCCLGATS  480
RLKW*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.9717	0.0	bud\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.005G023700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024456282.1	0.0	protein FAR1-RELATED SEQUENCE 12
TrEMBL	A0A2K2AAK5	0.0	A0A2K2AAK5_POPTR; Uncharacterized protein
STRING	POPTR_0005s02350.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF23115	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	2e-15	FAR1-related sequence 7

Link Out ? help Back to Top
Phytozome	Potri.005G023700.1
Entrez Gene	18098649