PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.004G227600.2

Common Name

POPTR_0004s23620g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 680aa MW: 78035.7 Da PI: 7.8677

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.004G227600.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.5	1.6e-21	63	156	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnH 87 +fY+e+Ak++GFs+r+++++ + + t+r fvC + g++ ++++++k +r+r+++r+gC+a ++++k + +w+vt ++++HnH Potri.004G227600.2 63 EFYSEFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTSNENKPQRNRKSSRCGCQAYMRISKVTelgAPEWRVTGFDNHHNH 153 6************9998877356667999***********999*****************998887889********** PP FAR1 88 ela 90 el Potri.004G227600.2 154 ELL 156 *96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.7E-18	63	156	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-18	279	370	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.755	557	590	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.7E-7	561	588	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.7E-6	565	592	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence Send to blast
MMSEEAGQML VVYDDPSDQR SLSLDDTSSA EESPDETRLS LETPNDAIPY IGQRFATHDE 60 GYEFYSEFAK RCGFSIRRHR TEGKDGVGKG LTRRYFVCHR AGNTPVKTSN ENKPQRNRKS 120 SRCGCQAYMR ISKVTELGAP EWRVTGFDNH HNHELLEPNQ VRFLPAYRTI SDTDKSRILM 180 FAKTGISVQQ MMRLMELEKC VEPGYLPFTE KDVRNLLQSF RKLDPEDESV DLLRMCRNIK 240 EKDPNFKFEY TLDSDNRLEN IAWSYASSVQ SYEIFGDAVV FDTTHRLTAF DLPLGIWVGM 300 NNYGMPCFFG CVISREENLR SLSWALKAFL GFMNGKAPQT ILTDQNMCLK DAIAKEMPST 360 KHALCIWMIV AKFPSWFNAV LGERYNEWKA EFYRLYNLES IEDFEQGWRD MVNIFGLHTN 420 RHVANLHALR NLWALPYLRS HFFAGMTAAG HSKSINAFIQ RFLSAQTRLA HFVEQVAVAV 480 DFKDQAAEQQ TMQQNLQNIS LKTGAPMESH AATVLTPYAF SKLQEQLVLA AHYASFQMED 540 GFHVRHHTKR EGGRIVYWVP REGIISCSCN QFEFSGILCR HALRVLSTGN CFQIPERYLP 600 LRWRRINTSS AKLLHSSNDH GERIQLLQNM VSSLITESAK SKERLDIATE QVSILLSRIR 660 DQPVPSQGIR DFTSIHRKL*

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence Send to blast

MMSEEAGQML VVYDDPSDQR SLSLDDTSSA EESPDETRLS LETPNDAIPY IGQRFATHDE  60
GYEFYSEFAK RCGFSIRRHR TEGKDGVGKG LTRRYFVCHR AGNTPVKTSN ENKPQRNRKS  120
SRCGCQAYMR ISKVTELGAP EWRVTGFDNH HNHELLEPNQ VRFLPAYRTI SDTDKSRILM  180
FAKTGISVQQ MMRLMELEKC VEPGYLPFTE KDVRNLLQSF RKLDPEDESV DLLRMCRNIK  240
EKDPNFKFEY TLDSDNRLEN IAWSYASSVQ SYEIFGDAVV FDTTHRLTAF DLPLGIWVGM  300
NNYGMPCFFG CVISREENLR SLSWALKAFL GFMNGKAPQT ILTDQNMCLK DAIAKEMPST  360
KHALCIWMIV AKFPSWFNAV LGERYNEWKA EFYRLYNLES IEDFEQGWRD MVNIFGLHTN  420
RHVANLHALR NLWALPYLRS HFFAGMTAAG HSKSINAFIQ RFLSAQTRLA HFVEQVAVAV  480
DFKDQAAEQQ TMQQNLQNIS LKTGAPMESH AATVLTPYAF SKLQEQLVLA AHYASFQMED  540
GFHVRHHTKR EGGRIVYWVP REGIISCSCN QFEFSGILCR HALRVLSTGN CFQIPERYLP  600
LRWRRINTSS AKLLHSSNDH GERIQLLQNM VSSLITESAK SKERLDIATE QVSILLSRIR  660
DQPVPSQGIR DFTSIHRKL*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.004G227600.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006385070.1	0.0	protein FAR1-RELATED SEQUENCE 11
Refseq	XP_024455672.1	0.0	protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	B9N0G8	0.0	B9N0G8_POPTR; Uncharacterized protein
STRING	POPTR_0004s23620.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Potri.004G227600.2
Entrez Gene	18098351

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]