PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G221700.1
Common NamePOPTR_0004s23050g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 379aa    MW: 43525.2 Da    PI: 6.5077
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G221700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.0005384106323
                         ET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                         C+   Cgk+F +   L++H   H
  Potri.004G221700.1  84 CSfeGCGKTFIDAGALRKHSHIH 106
                         77779**************7766 PP
2zf-C2H216.42.5e-05111135123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         y+C+   Cgk F ++s LkrH   H
  Potri.004G221700.1 111 YVCHyeGCGKKFLDSSKLKRHFLIH 135
                         9********************8877 PP
3zf-C2H220.71.1e-06141165123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         + Cp   Cgk Fs   nL++H++tH
  Potri.004G221700.1 141 FICPheGCGKAFSLDFNLRSHMKTH 165
                         78**********************9 PP
4zf-C2H2140.00015171195123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         + Cp   Cgk++ + + Lk+Hi +H
  Potri.004G221700.1 171 HICPypECGKRYAHEYKLKNHIGSH 195
                         679999****************885 PP
5zf-C2H2130.00031234259123
                         EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                         y Cp   C k + + + Lk H+r+ H
  Potri.004G221700.1 234 YICPyeGCEKDYIHEYKLKLHLRReH 259
                         89**********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.0E-1477108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.78382111IPR007087Zinc finger, C2H2
SMARTSM003550.003782106IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.17E-884135No hitNo description
PROSITE patternPS00028084106IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-14109131IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.921111140IPR007087Zinc finger, C2H2
SMARTSM003550.0024111135IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280113135IPR007087Zinc finger, C2H2
SuperFamilySSF576676.31E-14122174No hitNo description
Gene3DG3DSA:3.30.160.606.2E-20132165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.9E-4141165IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.591141170IPR007087Zinc finger, C2H2
PROSITE patternPS000280143165IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.4E-9166197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.067171195IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.824171200IPR007087Zinc finger, C2H2
PROSITE patternPS000280173196IPR007087Zinc finger, C2H2
SuperFamilySSF576674.7E-5229257No hitNo description
Gene3DG3DSA:3.30.160.605.3E-9232257IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.349234264IPR007087Zinc finger, C2H2
SMARTSM003550.016234259IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280236259IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MEAHHHHHQF THNIFERRPI IRSKTPAVKW FKEWVPQDVV ATGGRCSLFK WVTENQLNAL  60
KEKAKEPQAP EPEPEPTTEV LFLCSFEGCG KTFIDAGALR KHSHIHGERQ YVCHYEGCGK  120
KFLDSSKLKR HFLIHTGERD FICPHEGCGK AFSLDFNLRS HMKTHSQENY HICPYPECGK  180
RYAHEYKLKN HIGSHHEKNP TPEVVKYATP PERIPKNAKT PPGVYGSASS DRPYICPYEG  240
CEKDYIHEYK LKLHLRREHP GHMADENAEN ATPNADNELD EASDQDAYGG KRVNGKSQKQ  300
SRSKPNLKMP PVKIRQRKGS SPSPATLNVV KKPWTIKDET YEEEEDSEET EEEDRDNAED  360
GWRYGGNEDD DEETEDED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C7e-34842554119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.110750.0bud| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Rapidly induced following seed germination, especially in tender cotyledons. {ECO:0000269|PubMed:26961720}.
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers, to a lower extent in seedlings, stems and leaves, and, at low levels, in roots and senescent leaves. {ECO:0000269|PubMed:26961720}.
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G221700.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1485070.0EF148507.1 Populus trichocarpa x Populus deltoides clone WS0131_N16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006385011.10.0zinc finger transcription factor YY1
SwissprotQ2V3L31e-160YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLB9N0B20.0B9N0B2_POPTR; Uncharacterized protein
STRINGPOPTR_0004s23050.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56493354
Representative plantOGRP38561626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-152C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]