PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G221000.1
Common NamePOPTR_0004s22990g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 119aa    MW: 13476.4 Da    PI: 6.3459
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G221000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.42.6e-13686383
                        EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                  B3  3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFk 83
                        ++++++d  ++g l++p   +     ++ +s+ + + d +g +W + +++ r+ s +++l+ GW++Fv++ +L++ D v+++
  Potri.004G221000.1  6 SKFLTADDIENG-LSIPGCSLGPLPFQEGQSMNMHVHDGNGHEWIFSCTIkRNESTGHFLSVGWNKFVRERDLRVDDKVTIH 86
                        566688888888.99999888777888999******************885777778***********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.8E-13489IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.26E-10488IPR015300DNA-binding pseudobarrel domain
CDDcd100178.84E-10586No hitNo description
PfamPF023622.9E-11686IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MALVFSKFLT ADDIENGLSI PGCSLGPLPF QEGQSMNMHV HDGNGHEWIF SCTIKRNEST  60
GHFLSVGWNK FVRERDLRVD DKVTIHEEAM KNQAMGTWIK VEVKRKIRLF GEDVWADV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G221000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002451.11e-64PREDICTED: uncharacterized protein LOC105109425
TrEMBLB9N8A76e-83B9N8A7_POPTR; Uncharacterized protein
STRINGPOPTR_0004s22990.11e-83(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13182519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.14e-07ethylene response DNA binding factor 3