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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Potri.004G217100.1 |
| Common Name | POPTR_0004s22670g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
C2H2 |
| Protein Properties |
Length: 407aa MW: 45330.1 Da PI: 8.2953 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.004G217100.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 22.3 | 3.5e-07 | 232 | 254 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C+ Cgk F+r nL+ H+r H
Potri.004G217100.1 232 HYCQVCGKGFKRDANLRMHMRAH 254
68*******************99 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 407 aa
Download sequence Send
to blast |
MISGDSSCFP SASSQGLHMY QAVTEDVVSS TLEASSSSEA HSNSLLYNLS LLKDKVHQVE 60
SLISILIAPD HSQPNDHKST SVALANMSTM IQEIIVAASS VMFTCQQMGI GNDISGNNIN 120
TNDLHQPRGR KAEESSLLSQ PNFGGNHAGN IGQERGQSFF SPESFDWCSD NYNDNCNTNE 180
NIRGIHVSSN NRVDIRREIL SQGGEGILQG QSPKNYDIIE LDAADLLAKY THYCQVCGKG 240
FKRDANLRMH MRAHGDEYKT TAALSNPMKN NPTATPENKE ASMKLPRKYS CPHEGCRWNR 300
KHAKFQPLKS MICVKNHYKR SHCPKMYVCK RCSRKQFSVL SDLRTHEKHC GDLKWLCSCG 360
TTFSRKDKLM GHVALFFGHT PAISGLTRPT KFENQTMQMH LDHDRG*
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed at low levels in roots (e.g. root tips and lateral roots), leaves (e.g. at the edge of mature leaves, possibly in hydathodes, and in vascular bundles), flowers (e.g. floral filaments), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
