PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G183900.1
Common NamePOPTR_0004s19460g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 334aa    MW: 37848.2 Da    PI: 8.5873
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G183900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-05172191120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         + C++C+k+F+r  n++ H+
  Potri.004G183900.1 172 FACSICSKTFNRYNNMQMHM 191
                         78*****************9 PP
2zf-C2H213.80.00017256278123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C +C+k+F  k + ++H +++
  Potri.004G183900.1 256 FMCRKCSKTFAVKGDWRTHEKNC 278
                         89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.34E-5163195No hitNo description
PfamPF139122.4E-4172191IPR007087Zinc finger, C2H2
SMARTSM003550.17172194IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.45172199IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-5172191IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280174194IPR007087Zinc finger, C2H2
SMARTSM00355190219251IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.83E-6242276No hitNo description
Gene3DG3DSA:3.30.160.607.0E-5242276IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035553256276IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MGLCNYHVED KNLCFQAPNF IEWLKPSSSP SPSSSSSSLS NSSVTQQVQL TNPMSVLRLP  60
SLFPQQQHQQ REAMKETIQC LPLLSRFTEK KTLKDGDMEV KESTVGVKEE KEVTVALHIG  120
LPNSGDSEVE TEVLDLKEEI SMKKNFQGYS FNSESRFWIP TPAQILVGPM QFACSICSKT  180
FNRYNNMQMH MWGHGSEFRK GPDSLKGTQP AAMLRLPCYC CAQGCKNNIN HPRAKPLKDF  240
RTLQTHYKRK HGAKPFMCRK CSKTFAVKGD WRTHEKNCGK LWYCTCGSDF KHKRSLKDHI  300
RSFGKGHSPH PSLEGFEEID KECITGSEDE FAH*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G183900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305556.10.0zinc finger protein WIP3
SwissprotQ9SGD11e-129ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLB9H1R30.0B9H1R3_POPTR; Uncharacterized protein
STRINGPOPTR_0004s19460.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-122WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]