PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.004G181900.2 | ||||||||
Common Name | POPTR_0004s18860g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 259aa MW: 29977.5 Da PI: 8.9374 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 151.4 | 4.4e-47 | 11 | 137 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 pGfrFhPt+eel+++yLk+ v g+k++l +vi ++iy+++P++Lp k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d++++ Potri.004G181900.2 11 PGFRFHPTEEELLDFYLKNMVFGRKMRL-DVIGYLNIYRHDPSELPGLSKVGEREWYFFVPRDRKHGNGGRPNRTTQNGFWKATGSDRKIV 100 9**************************9.99***************8778899*************************************9 PP NAM 94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 s ++ +g +ktLvfykgrap+g+ktdWvm+eyrl Potri.004G181900.2 101 SLsdPKRMIGFRKTLVFYKGRAPRGSKTDWVMNEYRL 137 97666778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 53.535 | 9 | 156 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.24E-55 | 10 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-25 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045792 | Biological Process | negative regulation of cell size | ||||
GO:0048281 | Biological Process | inflorescence morphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MDEMPLQLDL PGFRFHPTEE ELLDFYLKNM VFGRKMRLDV IGYLNIYRHD PSELPGLSKV 60 GEREWYFFVP RDRKHGNGGR PNRTTQNGFW KATGSDRKIV SLSDPKRMIG FRKTLVFYKG 120 RAPRGSKTDW VMNEYRLPEY SSPLPKDIVL CKIYRKATSL KVLEQRAAME EEMKTIHASP 180 SSSSLDTMSF CSQPEDPVPP ELPTQHLVFK KEIEDDIIRY EKPREIKGPS LQLPMGTDKL 240 PELQVPSKLS MEWNQDPI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-45 | 7 | 161 | 17 | 173 | NAC domain-containing protein 19 |
3swm_B | 1e-45 | 7 | 161 | 17 | 173 | NAC domain-containing protein 19 |
3swm_C | 1e-45 | 7 | 161 | 17 | 173 | NAC domain-containing protein 19 |
3swm_D | 1e-45 | 7 | 161 | 17 | 173 | NAC domain-containing protein 19 |
3swp_A | 1e-45 | 7 | 161 | 17 | 173 | NAC domain-containing protein 19 |
3swp_B | 1e-45 | 7 | 161 | 17 | 173 | NAC domain-containing protein 19 |
3swp_C | 1e-45 | 7 | 161 | 17 | 173 | NAC domain-containing protein 19 |
3swp_D | 1e-45 | 7 | 161 | 17 | 173 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.1484 | 0.0 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.004G181900.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU224883 | 0.0 | CU224883.1 Populus EST from leave. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002305547.1 | 0.0 | NAC domain-containing protein 22 | ||||
Swissprot | Q10S65 | 1e-90 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | A0A3N7EU84 | 0.0 | A0A3N7EU84_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s18860.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 1e-107 | NAC domain containing protein 36 |
Link Out ? help Back to Top | |
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Phytozome | Potri.004G181900.2 |
Entrez Gene | 7470434 |
Publications ? help Back to Top | |||
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