PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G169500.2
Common NamePOPTR_0004s17670g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 283aa    MW: 31315.4 Da    PI: 8.5619
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G169500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.61.2e-092247127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                        +kt+ C  f   GtC+ G++C+FaHg+
  Potri.004G169500.2 22 FKTRVCAKFKT-GTCRNGENCNFAHGM 47
                        69*******99.*************95 PP
2zf-CCCH309e-1086109225
                         -S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                         k++lC+ f+ + +C+yGdrC+F H
  Potri.004G169500.2  86 KMKLCKKFYNGEECPYGDRCNFLH 109
                         789*******66************ PP
3zf-CCCH42.88.8e-14171196126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt+lC  +  tG+C++G++C+FaHg
  Potri.004G169500.2 171 WKTKLCTKWEMTGQCPFGEKCHFAHG 196
                         8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.9E-151754IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-81952IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.2532148IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-62147IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-72247IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.33384112IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-484111IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-784111IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-786109IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-986110IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-17165202IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-10169201IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.544170198IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-7170197IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-11171196IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MSSRVPPTNS LPVHKGTTNI FFKTRVCAKF KTGTCRNGEN CNFAHGMQDL RQPPPNWKEL  60
VSVGVSSEDD RSTATNREDD LRIIHKMKLC KKFYNGEECP YGDRCNFLHE DPANFREDTG  120
RFRESSAISI GTTDHLMGQG SGIFNAAEVN RPANNAVSDA PRSNLIKPVY WKTKLCTKWE  180
MTGQCPFGEK CHFAHGLAEL QVPGGRTEVD AGNAGSNVTK APTPVLPNNM SPSMTVNVPS  240
LVEEKGTKCL LKWKGQKKIN RIYADWLDDL SLVHNSTNQV QS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G169500.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454607.10.0zinc finger CCCH domain-containing protein 39 isoform X2
SwissprotQ9LT812e-93C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A3N7EY470.0A0A3N7EY47_POPTR; Uncharacterized protein
STRINGPOPTR_0004s17670.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.17e-96C3H family protein