PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G130900.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 195aa    MW: 21916.8 Da    PI: 8.7551
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G130900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.45.8e-211563149
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        krien+  r +tfskRr gi KKA+EL +LC+aevav++fs+ gk + +
  Potri.004G130900.1 15 KRIENEDDRLITFSKRRSGIYKKASELVTLCGAEVAVLVFSPAGKAFSF 63
                        79******************************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.6E-29766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.679767IPR002100Transcription factor, MADS-box
CDDcd002659.13E-32876No hitNo description
SuperFamilySSF554552.62E-26881IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-20929IPR002100Transcription factor, MADS-box
PfamPF003191.7E-231663IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-202944IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-204465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MEGKQTRGRQ KIAIKRIENE DDRLITFSKR RSGIYKKASE LVTLCGAEVA VLVFSPAGKA  60
FSFGHPSIES VANRFLGQNI APNDNTHPLV EAHRKVRINE LNQQHNELLS EMEAERDRGK  120
VLKEGTSEKS SQGWWEAPID ELSLQELKQM NVMLEEFHKN LHKTINELRR NGGASSSSFQ  180
VHTGHATNIP FCQL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G130900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305331.31e-143agamous-like MADS-box protein AGL61
TrEMBLA0A2K2ATX51e-142A0A2K2ATX5_POPTR; Uncharacterized protein
STRINGPOPTR_0004s13590.11e-124(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.13e-43AGAMOUS-like 57