PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G126700.1
Common NamePOPTR_0004s12530g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 355aa    MW: 40302.6 Da    PI: 8.9661
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G126700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-1758105148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
  Potri.004G126700.1  58 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL 105
                         79******************************99************97 PP
2Myb_DNA-binding46.11.1e-14111156148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++T  E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Potri.004G126700.1 111 RGNFTHNEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 156
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.01953105IPR017930Myb domain
SuperFamilySSF466894.49E-3055152IPR009057Homeodomain-like
SMARTSM007172.4E-1357107IPR001005SANT/Myb domain
PfamPF002493.7E-1658105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-2359112IPR009057Homeodomain-like
CDDcd001671.42E-1060105No hitNo description
PROSITE profilePS5129422.837106160IPR017930Myb domain
SMARTSM007171.5E-13110158IPR001005SANT/Myb domain
PfamPF002499.3E-14111156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-23113158IPR009057Homeodomain-like
CDDcd001676.99E-9113156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MLVLSLEKIK QFQEKRRIKA RVVFLLERKK SWRQACEKGR NKVIMGRPPC CDKIGVMKGP  60
WTPEEDIILV SYIQEHGPGN WRAVPTNTGL LRCSKSCRLR WTNYLRPGIK RGNFTHNEEK  120
MIIHLQALLG NRWAAIASYL PQRTDNDIKN YWNTHLKKLK KLQAGQEGQF RQISRGQWER  180
RLQTDIHMAR QALSEALSPE KPNSLLTELK PSCGYEKPAP ASLYASSTEN IAKLLKGWMR  240
SGPNQSLTNS TTTQNSFNNM AVADSFSSEE TLNRADENDT ELSEAFESLF GFDSSNIDFS  300
QSTSPDTGLL QDESKPNSSA QVPLSVIERW LFDEGAMQGK EYLSEVTPDE NNLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-24561582103MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-24561582103C-Myb DNA-Binding Domain
1msf_C4e-24561582103C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11429KRRIKARVVFLLERKK
21629RIKARVVFLLERKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.106101e-171bud
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G126700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164590.0AC216459.1 Populus trichocarpa clone POP074-L11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306049.20.0myb-related protein 306
SwissprotP813921e-111MYB06_ANTMA; Myb-related protein 306
TrEMBLB9H0F80.0B9H0F8_POPTR; Uncharacterized protein
STRINGPOPTR_0004s12530.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101634115
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.11e-105myb domain protein 30
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]