PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G119400.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 166aa    MW: 18595.2 Da    PI: 4.3844
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G119400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM81.71.6e-2581302128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka.eekewyfFskrdkkyatgkrknratksgyWkatgk.d 89 
                         ++G++F P d++lvv+yLk+k+ g++l++ + i+++d+y + P +Lp   ++  + +ew+fFs+++k          +++ gy +      
  Potri.004G119400.1   8 AAGYKFCPMDDDLVVYYLKRKILGEQLPA-NLIPTIDVYASSPDKLPlGLFQLgQANEWFFFSTKSKDD-----DITVIDGGYYEIDPDgA 92 
                         68***************************.89***************5433332667******998864.....4567899**99554426 PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++  +g+ vg  ktL fy+g+ p+g+ t+W+++e+r+
  Potri.004G119400.1  93 APITW-EGKIVGHVKTLFFYQGSPPNGTDTEWMVEEFRI 130
                         77877.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-317158IPR003441NAC domain
PROSITE profilePS5100530.5797159IPR003441NAC domain
PfamPF023651.5E-149130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MSSGVPVAAG YKFCPMDDDL VVYYLKRKIL GEQLPANLIP TIDVYASSPD KLPLGLFQLG  60
QANEWFFFST KSKDDDITVI DGGYYEIDPD GAAPITWEGK IVGHVKTLFF YQGSPPNGTD  120
TEWMVEEFRI NPEFVPVDKA DHNTQEKITN LVVCKIYRMR PLPEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-181015820164NO APICAL MERISTEM PROTEIN
1ut4_B3e-181015820164NO APICAL MERISTEM PROTEIN
1ut7_A3e-181015820164NO APICAL MERISTEM PROTEIN
1ut7_B3e-181015820164NO APICAL MERISTEM PROTEIN
3swm_A3e-181015823167NAC domain-containing protein 19
3swm_B3e-181015823167NAC domain-containing protein 19
3swm_C3e-181015823167NAC domain-containing protein 19
3swm_D3e-181015823167NAC domain-containing protein 19
3swp_A3e-181015823167NAC domain-containing protein 19
3swp_B3e-181015823167NAC domain-containing protein 19
3swp_C3e-181015823167NAC domain-containing protein 19
3swp_D3e-181015823167NAC domain-containing protein 19
4dul_A3e-181015820164NAC domain-containing protein 19
4dul_B3e-181015820164NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G119400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306067.21e-120NAC domain-containing protein 83 isoform X1
TrEMBLA0A2K2ATE11e-119A0A2K2ATE1_POPTR; Uncharacterized protein
STRINGPOPTR_0004s11840.11e-105(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14452718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.12e-22NAC-like, activated by AP3/PI