PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G118100.1
Common NamePOPTR_0004s11730g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 566aa    MW: 63570.1 Da    PI: 6.3907
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G118100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00051931123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ C+ksF +  +L  H+r H
  Potri.004G118100.1  9 HVCKLCNKSFLTGNMLGGHMRIH 31
                        79*******************99 PP
2zf-C2H211.40.00181102223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         kC  Cgk F +  +L+ H+r H
  Potri.004G118100.1  81 KCRFCGKEFGSEKSLHGHMRHH 102
                         7*******************99 PP
3zf-C2H211.60.00089112132323
                         ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                         C+ Cg+ F +  +L +H r+H
  Potri.004G118100.1 112 CEECGRGFLSLKSLSNHKRLH 132
                         *******************99 PP
4zf-C2H2110.0013392414123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C +C++ F++  +L  H+  H
  Potri.004G118100.1 392 FTCRICNRKFNTYQSLGGHQTFH 414
                         89**************9999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.92E-7536No hitNo description
Gene3DG3DSA:3.30.160.601.4E-4631IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.062931IPR015880Zinc finger, C2H2-like
PfamPF139123.5E-5931IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.97936IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SMARTSM003550.02180102IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.90780107IPR007087Zinc finger, C2H2
SuperFamilySSF576674.9E-880132No hitNo description
PfamPF139123.3E-481104IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SMARTSM003550.29110132IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.949110137IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.9E-4112133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280112132IPR007087Zinc finger, C2H2
PfamPF139120.0055112134IPR007087Zinc finger, C2H2
SMARTSM003550.21392414IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64392419IPR007087Zinc finger, C2H2
PfamPF139122.9E-6392416IPR007087Zinc finger, C2H2
SuperFamilySSF576672.44E-7392414No hitNo description
PROSITE patternPS000280394414IPR007087Zinc finger, C2H2
SuperFamilySSF576672.44E-7466493No hitNo description
SMARTSM003551.6471493IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.016471493IPR007087Zinc finger, C2H2
PfamPF139124.0E-8471493IPR007087Zinc finger, C2H2
PROSITE patternPS000280473493IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MKKNQEKMHV CKLCNKSFLT GNMLGGHMRI HGTRKSIKGN VKFESSNVGP DSCGVREQPK  60
KSWKSSDFNH DDSVSTQETV KCRFCGKEFG SEKSLHGHMR HHPAKERKGV YCEECGRGFL  120
SLKSLSNHKR LHREKFTISS EPRASSRPNL VSMALSATEA VNLVRRKRSS RMRYKITPNS  180
SFSSLNESVS GFDIDQEVEE AALTLIMMSR SECNGFDSLC RNKRIERDED CHVFHGNELV  240
KPKKPREDNL DSCDLDSMTS IHGCGGEGDT ETGRDEENQV RSEVPGETTF KDIESKSPQL  300
DDESGVEFCR IDIEKGDHDE MLTTCTEAES SQDLMSEVGL DCAGSGFEKS IPSNQARFDA  360
CNSEMGKESR YQMEVTTSSY DIMQGPSKKG DFTCRICNRK FNTYQSLGGH QTFHRKSPIE  420
VKVDSCEKDI QTNFSAETEA TGKLECIQEL AKQESDEVIV KDCESKEGKE HKCSICFKVF  480
LSGQALGGHK RAHFLRAREE QNTAMKQEVP GICDALNVDV PYTFAAEASN DVRCESWCVR  540
CESWWPANSH NHEPLMNKNI IVDLD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G118100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454917.10.0zinc finger protein 423
TrEMBLB9H0I40.0B9H0I4_POPTR; Uncharacterized protein
STRINGPOPTR_0004s11730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133592027
Representative plantOGRP1487534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.11e-17C2H2 family protein