PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G115400.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 256aa    MW: 29538.6 Da    PI: 7.6672
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G115400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.51.1e-30959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krienk+nrqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+eys+
  Potri.004G115400.1  9 KRIENKINRQVTFSKRRTGLLKKAHEISVLCDADVALIVFSTRGKLFEYST 59
                        79***********************************************96 PP
2K-box94.12.3e-31781744100
               K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                         ++ + + ++++es++ e+ kL +++e Lqr++R++ G++L++LslkeLq Leqq++++lk+iRs+Kn+l++e+++el+kkekelqe+n+ L
  Potri.004G115400.1  78 QQLVPNGSEHQESWSLEHPKLMARVEILQRNLRNYAGQELDPLSLKELQYLEQQIDTALKRIRSRKNQLIHESLNELRKKEKELQEQNNIL 168
                         5666678999********************************************************************************* PP

               K-box  95 rkklee 100
                          ++++e
  Potri.004G115400.1 169 AEQVKE 174
                         **9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.24161IPR002100Transcription factor, MADS-box
SMARTSM004329.1E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-33291IPR002100Transcription factor, MADS-box
CDDcd002653.56E-41275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-31323IPR002100Transcription factor, MADS-box
PfamPF003192.7E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-313859IPR002100Transcription factor, MADS-box
PfamPF014867.0E-2684172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.30688178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRTGLLK KAHEISVLCD ADVALIVFST RGKLFEYSTD  60
SSMESILERY ERCSYLEQQL VPNGSEHQES WSLEHPKLMA RVEILQRNLR NYAGQELDPL  120
SLKELQYLEQ QIDTALKRIR SRKNQLIHES LNELRKKEKE LQEQNNILAE QVKENEKSLT  180
EQAQWEQRNL GQNSSSFMPP VVQPPLQPPM PPHAPLTIGD SFQIIGFLNG NENVEVQTPP  240
STMPSWMLRH VNDTI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-20170169MEF2C
5f28_B2e-20170169MEF2C
5f28_C2e-20170169MEF2C
5f28_D2e-20170169MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.34970.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G115400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2083773e-98AC208377.1 Populus trichocarpa clone JGIACSB249-L10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306050.30.0truncated transcription factor CAULIFLOWER A
SwissprotD7SMN61e-100FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A2K2AT730.0A0A2K2AT73_POPTR; Uncharacterized protein
STRINGEOY037921e-112(Theobroma cacao)
STRINGXP_010029407.11e-112(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.13e-77AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]