PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G112900.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 272aa    MW: 30187.2 Da    PI: 4.7831
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G112900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH567.1e-184392255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        r +h+e E+rRR++iN++f+ Lr l+P++    ++K +Ka+ L +++eYI+ Lq
  Potri.004G112900.2 43 RSKHSETEQRRRSKINERFQALRNLIPQN----DQKRDKASFLLEVIEYIQFLQ 92
                        899*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.9E-2438112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-2040112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.4854191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-174396No hitNo description
PfamPF000102.1E-154392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-134797IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MVKSAKSQLD EEDEPEDYDS SSYKGEVLKP ESKSSEPKAN ANRSKHSETE QRRRSKINER  60
FQALRNLIPQ NDQKRDKASF LLEVIEYIQF LQEKLQVYEG SYEGWSQEPA KLLPWKIDRA  120
SAESLLDHTQ VMKNGSAHEN SVMLANVHNS IESDMGTAAM YKALDHPHGP TNPAIPFDVQ  180
TPSNVFAAVG RGGLPTQSLQ ESVSDVENMA YQLQSQLLHG RPCATECSTP NNTLNGQEDL  240
ASDSLSDIEY SDPSTTILWC GSSTDKHRSA N*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.45180.0bud
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G112900.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006384263.10.0transcription factor BIM2 isoform X1
SwissprotQ9FMB63e-39BIM3_ARATH; Transcription factor BIM3
TrEMBLA0A2I4KKD70.0A0A2I4KKD7_POPTR; BHLH family protein
STRINGPOPTR_0004s11180.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38860.19e-42BES1-interacting Myc-like protein 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]