PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.004G107200.1 | ||||||||
Common Name | POPTR_0004s10700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 366aa MW: 41091.5 Da PI: 4.5643 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 71.4 | 2.4e-22 | 9 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkd 89 l pG+rF+Ptd+elv++yL +kv++ + ++ ++++diy ++P ++ + ++ + ++++fF++ +kk++t++ +++ a ++W+ +d Potri.004G107200.1 9 LLPGYRFSPTDQELVQFYLYPKVTNPLFITSAPVRDCDIYAYQPLQIWnAFHRLQGEDVFFFTNLKKKSPTSHVTRKiAGGPATWHREDTD 99 579*********************999877677**************734445578899************9999995556789******* PP NAM 90 kevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ ++ + +++ ++k++ + + + + + + W+m ey+l Potri.004G107200.1 100 RAIGVAideHCTVTAIRKSFSYQSTQ-SGQHGCGWTMYEYSL 140 ***998765666699******98544.44478********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-23 | 7 | 155 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 26.78 | 9 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.6E-16 | 11 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MDFSVPQTLL PGYRFSPTDQ ELVQFYLYPK VTNPLFITSA PVRDCDIYAY QPLQIWNAFH 60 RLQGEDVFFF TNLKKKSPTS HVTRKIAGGP ATWHREDTDR AIGVAIDEHC TVTAIRKSFS 120 YQSTQSGQHG CGWTMYEYSL PSLSQVIVLC QLRRKEDNKS HTQTTKKRRR QADGVDDATN 180 TISQKARVGE GYHQQQITGF EAAAETESEI VYNGVTFDNL ESFSHQLVQD FDNDQVAVSS 240 VVSTINVAEP TVSTSRCAEN LQPNKVVCID NDEEPSATEE DDDYHRELLR LLDFDGSTPV 300 ESLATDADGY HLDAQVSGSS LSSGWRGLFS QQLPQANPTC LVQENEVEMI YNPFRMESPY 360 EVSLL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 152 | 169 | RRKEDNKSHTQTTKKRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.004G107200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216913 | 0.0 | AC216913.1 Populus trichocarpa clone POP030-J10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002306342.1 | 0.0 | NAC domain-containing protein 101 | ||||
TrEMBL | A0A2K2ASV9 | 0.0 | A0A2K2ASV9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s10700.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13633 | 5 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62380.1 | 5e-16 | NAC-domain protein 101 |
Link Out ? help Back to Top | |
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Phytozome | Potri.004G107200.1 |
Entrez Gene | 18097634 |