PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G074300.5
Common NamePOPTR_0004s07270g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 430aa    MW: 47403.7 Da    PI: 6.273
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G074300.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-1658102147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         r rWT+eE++++++a k++G   W++I +++g ++t+ q++s+ qk+
  Potri.004G074300.5  58 RERWTEEEHKKFLEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 102
                         78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.72E-1752106IPR009057Homeodomain-like
PROSITE profilePS5129421.47653107IPR017930Myb domain
TIGRFAMsTIGR015574.8E-1756105IPR006447Myb domain, plants
SMARTSM007172.5E-1357105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-95898IPR009057Homeodomain-like
PfamPF002494.8E-1458101IPR001005SANT/Myb domain
CDDcd001672.04E-1060103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MQDQCGGTRL NLVLPAGNGI SLSAPLNNAS GQQLKEQFSC GSDYSPKARK PYTITKQRER  60
WTEEEHKKFL EALKLYGRAW RRIEEHVGTK TAVQIRSHAQ KFFSKVVRES GGSNTSSVEP  120
IEIPPPRPKR KPMHPYPRKL AHPLEKELLI PEKSLRSSSP NFSISEQENQ SPTSVLSAVG  180
SDALGSTDSD TPNHSLSPVS FAGGVHHADS SPEEDGSPSP ATASSVPDEQ FPKKLDSSPE  240
ENVSSDEPVV EETSTRSLKL FGRTVLVTEW HKPSSPNMGT SKLSTPDAAE EKLVRPLTLN  300
NVAAEFPFRN GESTWKNLDS KGDEVQDKEI PKEVSWTGSN SGLVSEGENV DKNMDAETES  360
QQFSYEEKEL SPIFELKLTR KSASSGSKVI NEKCPKGFVP YKKRIAERDS QSSTITGEER  420
EEQRIRLCL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.3500.0bud| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G074300.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1479721e-119EF147972.1 Populus trichocarpa clone WS0126_F21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035339.10.0PREDICTED: protein REVEILLE 1-like isoform X2
TrEMBLA0A2K2AR850.0A0A2K2AR85_POPTR; Uncharacterized protein
STRINGPOPTR_0004s07270.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.17e-75MYB_related family protein