PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G072000.1
Common NamePOPTR_0004s07050g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 431aa    MW: 47008.9 Da    PI: 4.9149
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G072000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.71.6e-30207265259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers++dp+++++ Y+g+H+h+
  Potri.004G072000.1 207 NDVWAWRKYGQKPIKGSPYPRNYYRCSSSkGCAARKQVERSNTDPNMFIVCYTGDHTHP 265
                         8**************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.2E-31193267IPR003657WRKY domain
SuperFamilySSF1182901.44E-26201267IPR003657WRKY domain
PROSITE profilePS5081133.029201267IPR003657WRKY domain
SMARTSM007743.5E-36206266IPR003657WRKY domain
PfamPF031067.3E-26207265IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MAEDQDWDLY AVVRSCTSAA AATNRNSSSS NISENFECLD SLTFDDDDDD GESNPFSFPN  60
LASQPRNNNC LQELQDSYKP FLPSFTTSTG LQGKNSNNNI PSFSISDFGV IFSGQNQPQL  120
AQQQQQQQQQ PLTTPSTSVA ISPWFNNSQK QPQHVQQQQN QRRQLHQQGT STSSLFPLRT  180
TQSQTPRKKK SNQKRLISHV TAENLSNDVW AWRKYGQKPI KGSPYPRNYY RCSSSKGCAA  240
RKQVERSNTD PNMFIVCYTG DHTHPRPTHR NSLAGSTRNK VQQPAQKPEN KESEHPISAD  300
RGSCSSPLSA TSLSPRTTLS APIYNIEAVG NEQESIKTHN LEGGHGLMGS DDHEDDVDDC  360
DNDINDDYDD DLLIPNMALN EDLIKGFQEL VSGNEGGGLS NSPAFGDDFS SSVVGGSAST  420
TAGATGGGGC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-192082681880Disease resistance protein RRS1
5w3x_D1e-192082681880Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G072000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305271.20.0probable WRKY transcription factor 27
TrEMBLB9H3N00.0B9H3N0_POPTR; Uncharacterized protein
STRINGPOPTR_0004s07050.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67943249
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.11e-54WRKY DNA-binding protein 27