PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.004G071600.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRAS | ||||||||
Protein Properties | Length: 708aa MW: 82026.9 Da PI: 6.5527 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 179.6 | 2.2e-55 | 7 | 362 | 4 | 374 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 L++cA+a+++gdl+ a++l + ++ l++ + + +++++ yf+eALa+r+++ ++ +p + + + k+ +e sP+ f Potri.004G071600.4 7 KLMDCAKAIADGDLKFADQLFSDMEALSAAETnRVTKKVVEYFAEALARRVHG-----VHPRNPVP-----LLPSSNLKKISYEPSPLEWF 87 79*************************55555399******************.....33333333.....344445566789******** PP GRAS 94 shltaNqaIleavege.ervHiiDfdis.qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181 + + + aI + ++ + +++H i ++ Q +L + L +g p s++ T ++ s++ + l+e ++ ++++ +++ v+f++++l Potri.004G071600.4 88 ACMSTDYAIRDVLNVKkNKLHLIEISSLvDFWQRRSLEEFLLHGHHGMPlSFQYTSSRPKLSKNDDYLQENRRMITEVVQRFPVDFKYRAL 178 *************9886999*****8651567888888888877777777*********9999**************************** PP GRAS 182 vakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269 a+++ d+ + Lr+++ +E ++V +v+qlh+ll +le + d+vL+ +k+l+P+++v+veqead n+ +F+ rf+++++yy +lf+ Potri.004G071600.4 179 FADSVPDIVESVLRLERtseDEIIIVRWVFQLHKLL----ALEGAVDKVLSKLKDLKPDIMVIVEQEADNNTDDFFYRFASSFKYYLSLFE 265 ********999998877778***************9....55555666******************************************* PP GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360 sle +++ Er+ l+++i+nvva eg er+erhetl++W++rl a F +v+l ++ ++ l ++ y++ee+sg vl Potri.004G071600.4 266 SLELY--ATNLSSLIWERH-LRWQICNVVASEGIERIERHETLARWQQRLYGARFCSVSLCSNQFAD---FLYDFP--AYKIEENSGFPVL 348 **998..689999999*99.****************************************9876655...566666..7************ PP GRAS 361 gWkdrpLvsvSaWr 374 ++pL+++S+W+ Potri.004G071600.4 349 LAAGHPLIFASVWK 362 *************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 31.412 | 1 | 347 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.7E-53 | 7 | 362 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50600 | 13.993 | 482 | 662 | IPR003653 | Ulp1 protease family, C-terminal catalytic domain |
SuperFamily | SSF54001 | 1.14E-31 | 507 | 689 | No hit | No description |
Pfam | PF02902 | 2.5E-20 | 509 | 688 | IPR003653 | Ulp1 protease family, C-terminal catalytic domain |
Gene3D | G3DSA:3.30.310.130 | 1.2E-12 | 563 | 657 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006508 | Biological Process | proteolysis | ||||
GO:0008234 | Molecular Function | cysteine-type peptidase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 708 aa Download sequence Send to blast |
MDPLVIKLMD CAKAIADGDL KFADQLFSDM EALSAAETNR VTKKVVEYFA EALARRVHGV 60 HPRNPVPLLP SSNLKKISYE PSPLEWFACM STDYAIRDVL NVKKNKLHLI EISSLVDFWQ 120 RRSLEEFLLH GHHGMPLSFQ YTSSRPKLSK NDDYLQENRR MITEVVQRFP VDFKYRALFA 180 DSVPDIVESV LRLERTSEDE IIIVRWVFQL HKLLALEGAV DKVLSKLKDL KPDIMVIVEQ 240 EADNNTDDFF YRFASSFKYY LSLFESLELY ATNLSSLIWE RHLRWQICNV VASEGIERIE 300 RHETLARWQQ RLYGARFCSV SLCSNQFADF LYDFPAYKIE ENSGFPVLLA AGHPLIFASV 360 WKPANAAHFS GENIGNTDDT MRGTDLNHPI TIQEESTSPV VEPEAVSSSE FAEPEVVSSS 420 ESDDDNEYVY NRIRGLTHGK IWSVEEVREY LVSPFTEKES KRLSRWKSRQ LTRNVAGRDK 480 QLNVPDTSLA SLLRIPPSST PIREEKQYYV DDSVINAFFD LLKKRQEKFP DWYRRNSSLP 540 TWTMTFLLSG KWTMTKLLSC INIEEIAGTS KLFIPLCLEN HWILICVDME KRGLLWLDSL 600 NSPPDAHHTE KATISEWLVK HLLPVLGYRN SQQWKFLQLK DIPYQTNRID CGIFVMKYAD 660 CLAHCDHFPF TQQDMPHFRL RVFLDIYRGR LPVPPSHVRF LRALYNI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 1e-15 | 8 | 363 | 91 | 474 | Protein SHORT-ROOT |
5b3h_B | 8e-16 | 8 | 363 | 37 | 420 | Protein SHORT-ROOT |
5b3h_E | 8e-16 | 8 | 363 | 37 | 420 | Protein SHORT-ROOT |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.004G071600.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF148337 | 0.0 | EF148337.1 Populus trichocarpa x Populus deltoides clone WS01313_H03 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024454356.1 | 0.0 | DELLA protein GAIP isoform X1 | ||||
TrEMBL | A0A2I4KKT3 | 0.0 | A0A2I4KKT3_POPTR; GRAS family protein | ||||
STRING | POPTR_0004s07000.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01570.1 | 4e-47 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.004G071600.4 |