PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G062300.1
Common NamePOPTR_0004s06090g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 408aa    MW: 46642.1 Da    PI: 4.9105
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G062300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.11.4e-33141052102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl k+ye+++d++++ ++sws++++sf v+d+ efa+++Lp++Fkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+  
  Potri.004G062300.1  14 FLAKTYEMVDDPSTDPIVSWSQSNKSFTVWDPPEFARDLLPRFFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFANEDFIRGQPF 95 
                         9***************************************************************9998.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         l+++i+r+k 
  Potri.004G062300.1  96 LMKNIHRRKP 105
                         *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.17E-359103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.7E-6310103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.6E-3710103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.0E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.6E-3014103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MDESQGSPNS LPPFLAKTYE MVDDPSTDPI VSWSQSNKSF TVWDPPEFAR DLLPRFFKHN  60
NFSSFIRQLN TYGFRKIDPE QWEFANEDFI RGQPFLMKNI HRRKPVHSHS LQNLQGQGSN  120
LLTDSERQSM KDDIERLKRD KEALILELQM QEQERKGFEM QIEGLKEKLQ QMERRQQTMV  180
SFVTRVMPKP GLALNLMPQL EGHDRKRRLP RIGCLHSEAS SNEDNQTVTS QALSRENADG  240
NSFALLNMEQ FEQLESSLTF WENMVNDVVQ THSHNTKTIE MDESTSGAES PAISCAQLIF  300
DFRPKTPGID MNSEPSIAVV PEPVSPKEQP AGTAPAVATG VNDVFWEQFL TENPGSTDTQ  360
EVQSERKDSD GRKNEIKPGD PRKFWWDMRN VNNLTEQMGH LTPAERT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-25710322129Heat shock factor protein 1
5d5v_B2e-25710322129Heat shock factor protein 1
5d5v_D2e-25710322129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203208DRKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G062300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0139810.0KP013981.1 Populus simonii heat shock transcription factor A4b2 (HsfA4b2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305052.20.0heat stress transcription factor A-4c isoform X1
SwissprotO494031e-137HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLB9H2D80.0B9H2D8_POPTR; Uncharacterized protein
STRINGPOPTR_0004s06090.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Representative plantOGRP52351020
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-132heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]