PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.004G050900.1

Common Name

POPTR_0004s05030g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

VOZ

Protein Properties

Length: 492aa MW: 54639.1 Da PI: 5.174

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.004G050900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	438.4	9e-135	208	425	1	217
VOZ 1 pppsaflgpkcalwdctrpaqg.sewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspw 90 pppsaflgpkcalwdc+rpaqg ew+qdycssfh +lalneg+pg++pvlrp+gi+lkdgllfaalsak++gk+vgipecegaatakspw Potri.004G050900.1 208 PPPSAFLGPKCALWDCPRPAQGgLEWCQDYCSSFHHSLALNEGPPGMSPVLRPGGIGLKDGLLFAALSAKAEGKDVGIPECEGAATAKSPW 298 89****************9648*************************************************************** PP VOZ 91 naaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldala 181 na+elfdls+leget+rewlffdkprrafesgnrkqrslpdy+grgwhesrkqvm+efgglkrsyymdpqp+++fewhlyeyein++da+a Potri.004G050900.1 299 NAPELFDLSVLEGETLREWLFFDKPRRAFESGNRKQRSLPDYTGRGWHESRKQVMNEFGGLKRSYYMDPQPLNNFEWHLYEYEINKCDACA 389 *************************************************************************************** PP VOZ 182 lyrlelklvdekksakgkvskdsladlqkklgrlta 217 lyrlelk vd+kk+akgk++++s+adlqk++grlta Potri.004G050900.1 390 LYRLELKAVDGKKTAKGKIANESVADLQKQMGRLTA 425 ********************************97 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009408	Biological Process	response to heat
GO:0009414	Biological Process	response to water deprivation
GO:0009631	Biological Process	cold acclimation
GO:0009816	Biological Process	defense response to bacterium, incompatible interaction
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048578	Biological Process	positive regulation of long-day photoperiodism, flowering
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence Send to blast
MGKGSKINCK SASHKLFKDK AKNRVDDLQG MFLDLQFARK ESRTVDVAVL EEQVHQMLRE 60 WKSELNEPSP ASSLQQGGSL GSFSTDICRL LQLCEEEDDA TSALAAPKLE PNDQSMQGGD 120 NVVFQEEYAV NHGQQEHAFP FVDQCKDSPS GVRSLAINNI EGAAQLDYHQ FDLPQSFEQN 180 FYTSFNGTDL GEEDGMHHVS SYLPSMCPPP SAFLGPKCAL WDCPRPAQGG LEWCQDYCSS 240 FHHSLALNEG PPGMSPVLRP GGIGLKDGLL FAALSAKAEG KDVGIPECEG AATAKSPWNA 300 PELFDLSVLE GETLREWLFF DKPRRAFESG NRKQRSLPDY TGRGWHESRK QVMNEFGGLK 360 RSYYMDPQPL NNFEWHLYEY EINKCDACAL YRLELKAVDG KKTAKGKIAN ESVADLQKQM 420 GRLTAEFPPD NKRAVKGRTK VNAKVGVGNV YSGSTQVAPT NEAYDYGPGP HYDDYLVENL 480 EGYYLTQYKK P*

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence Send to blast

MGKGSKINCK SASHKLFKDK AKNRVDDLQG MFLDLQFARK ESRTVDVAVL EEQVHQMLRE  60
WKSELNEPSP ASSLQQGGSL GSFSTDICRL LQLCEEEDDA TSALAAPKLE PNDQSMQGGD  120
NVVFQEEYAV NHGQQEHAFP FVDQCKDSPS GVRSLAINNI EGAAQLDYHQ FDLPQSFEQN  180
FYTSFNGTDL GEEDGMHHVS SYLPSMCPPP SAFLGPKCAL WDCPRPAQGG LEWCQDYCSS  240
FHHSLALNEG PPGMSPVLRP GGIGLKDGLL FAALSAKAEG KDVGIPECEG AATAKSPWNA  300
PELFDLSVLE GETLREWLFF DKPRRAFESG NRKQRSLPDY TGRGWHESRK QVMNEFGGLK  360
RSYYMDPQPL NNFEWHLYEY EINKCDACAL YRLELKAVDG KKTAKGKIAN ESVADLQKQM  420
GRLTAEFPPD NKRAVKGRTK VNAKVGVGNV YSGSTQVAPT NEAYDYGPGP HYDDYLVENL  480
EGYYLTQYKK P*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.004G050900.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002305772.1	0.0	transcription factor VOZ1 isoform X1
Refseq	XP_024455709.1	0.0	transcription factor VOZ1 isoform X1
Refseq	XP_024455710.1	0.0	transcription factor VOZ1 isoform X1
Refseq	XP_024455711.1	0.0	transcription factor VOZ1 isoform X1
Swissprot	Q9SGQ0	0.0	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	B9H2N9	0.0	B9H2N9_POPTR; Uncharacterized protein
STRING	POPTR_0004s05030.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1498	34	94
Representative plant	OGRP2327	13	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	0.0	vascular plant one zinc finger protein

Link Out ? help Back to Top
Phytozome	Potri.004G050900.1
Entrez Gene	7476367

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]