PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G044400.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 185aa    MW: 20802.4 Da    PI: 6.8951
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G044400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12961255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS
                 HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55
                        r+  + +Er+RR+++++ +++L +l+P+ +   + +  ls  + L +A  YIk Lq
  Potri.004G044400.1  9 RTDRKLIERNRRNQMKELYSQLNSLVPHqS---SREPvLSVPDQLDEAASYIKRLQ 61
                        778899**********************54...55566*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-13578IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.96E-7565No hitNo description
PROSITE profilePS5088812.214760IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-9961IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-12974IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-51366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MEHNPSSSRT DRKLIERNRR NQMKELYSQL NSLVPHQSSR EPVLSVPDQL DEAASYIKRL  60
QTNLEKMKEK KDSLMGMERA DYTCKNSSGG KTAGLRSPQI EVSEMGSTLE VVLMNGLDSR  120
FMFNEIIRVL HEEGAEIINA SLSVVEDTVF HTIHSKVGDS AHSVNGAARI SHRLKKFVQD  180
DNEF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G044400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305793.21e-134transcription factor bHLH162
SwissprotF4JIJ75e-45BH162_ARATH; Transcription factor bHLH162
TrEMBLA0A2K2APU41e-133A0A2K2APU4_POPTR; Uncharacterized protein
STRINGPOPTR_0004s04430.11e-110(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-47bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]