PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.004G043100.2

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

LSD

Protein Properties

Length: 140aa MW: 15298.5 Da PI: 4.8895

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.004G043100.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	29.3	1.4e-09	48	72	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYP G ++V+C +C+ + Potri.004G043100.2 48 CGSCRRLLSYPKGVRHVQCQCCQMI 72 **********************975 PP
2	zf-LSD1	46	8.3e-15	86	110	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C++lL+YP+GA+sVRC++C +V Potri.004G043100.2 86 CGSCDVLLMYPYGASSVRCSSCRFV 110 **********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	3.8E-13	45	75	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.4E-9	48	72	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	3.8E-12	83	111	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	8.6E-13	86	110	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 140 aa Download sequence Send to blast
MASKEEDMAE AEEEEGPPPG WQSFPPEPSL PPPPTPPPPP SELGQMVCGS CRRLLSYPKG 60 VRHVQCQCCQ MINFVLEAHE VGQVKCGSCD VLLMYPYGAS SVRCSSCRFV TEIGEQNRRP 120 PWSVIQGYPP RPMPSNPIS*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.004G043100.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002305138.3	4e-96	protein LOL2
Swissprot	O65426	8e-42	LOL2_ARATH; Protein LOL2
TrEMBL	A0A2K2APT0	9e-95	A0A2K2APT0_POPTR; Uncharacterized protein
STRING	POPTR_0004s04310.1	5e-69	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	9e-41	lsd one like 2

Link Out ? help Back to Top
Phytozome	Potri.004G043100.2