PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G043100.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LSD
Protein Properties Length: 140aa    MW: 15298.5 Da    PI: 4.8895
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G043100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD129.31.4e-094872125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        Cg+Cr lLsYP G ++V+C +C+ +
  Potri.004G043100.1 48 CGSCRRLLSYPKGVRHVQCQCCQMI 72
                        **********************975 PP
2zf-LSD1468.3e-1586110125
             zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                         Cg+C++lL+YP+GA+sVRC++C +V
  Potri.004G043100.1  86 CGSCDVLLMYPYGASSVRCSSCRFV 110
                         **********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010533.8E-134575IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-94872IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.8E-1283111IPR005735Zinc finger, LSD1-type
PfamPF069438.6E-1386110IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MASKEEDMAE AEEEEGPPPG WQSFPPEPSL PPPPTPPPPP SELGQMVCGS CRRLLSYPKG  60
VRHVQCQCCQ MINFVLEAHE VGQVKCGSCD VLLMYPYGAS SVRCSSCRFV TEIGEQNRRP  120
PWSVIQGYPP RPMPSNPIS*
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G043100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305138.34e-96protein LOL2
SwissprotO654268e-42LOL2_ARATH; Protein LOL2
TrEMBLA0A2K2APT09e-95A0A2K2APT0_POPTR; Uncharacterized protein
STRINGPOPTR_0004s04310.15e-69(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130263132
Representative plantOGRP11461753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.19e-41lsd one like 2