PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.004G010000.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

G2-like

Protein Properties

Length: 300aa MW: 33504.2 Da PI: 9.8139

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.004G010000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101	7.9e-32	51	104	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrW+p+LH++Fv+ave LGG+++AtPk +l++m+vkgLt++hvkSHLQ+YR+ Potri.004G010000.1 51 PRLRWAPDLHHCFVHAVEWLGGEDRATPKMVLQIMDVKGLTISHVKSHLQMYRS 104 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-30	47	106	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.7E-14	49	105	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-22	51	105	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MKKVEIESSL NKGSPSSSLD IRVTKRGVAG SLQEKNMKSA TVRPYVRSKM PRLRWAPDLH 60 HCFVHAVEWL GGEDRATPKM VLQIMDVKGL TISHVKSHLQ MYRSMKHEQM TQEAAMEAKK 120 NGKEPKIHHS NYLTHTMCCQ QNRQLNGKGL VNNNALLHQG RGAHNPANGL ALRNASFLTS 180 QRKDREGLWI GKKVNEPFLH EEKTSKEWEQ KPDNYIIFKD LLKSCNGTET NDQDKMSAGA 240 AGCNKSNQSL EELDEIAQRI DGDGMTLSLK SKVSESFLKP SKAKNSSDVN DVSLELTLA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-17	52	107	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-17	52	107	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-17	52	107	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	52	107	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	52	107	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	52	107	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-17	52	107	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-17	52	107	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-17	52	107	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-17	52	107	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-17	52	107	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-17	52	107	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.004G010000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC149575	1e-121	AC149575.1 Populus trichocarpa clone Pop1-41G18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006383901.2	0.0	myb family transcription factor PHL12
TrEMBL	A0A3N7EVF1	0.0	A0A3N7EVF1_POPTR; Uncharacterized protein
STRING	cassava4.1_021436m	1e-106	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9381	28	40
Representative plant	OGRP285	15	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	1e-33	G2-like family protein

Link Out ? help Back to Top
Phytozome	Potri.004G010000.1