PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G212800.1
Common NamePOPTR_0003s21810g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family RAV
Protein Properties Length: 370aa    MW: 42725.4 Da    PI: 8.8955
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G212800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.31.2e-104490254
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                        ++kG+    k+g W A+I+       + +r++lg+f t++eAa a++ a+ kl+
  Potri.003G212800.1 44 KFKGIV-PQKNGHWGAQIYS------NhQRIWLGTFKTEKEAAMAYDSAAIKLR 90
                        678886.455899****999......44**********99************98 PP
2B385.74.1e-27169265183
                         EEEE-..-HHHHTT-EE--HHH.HTT................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 
                         f+k ltpsdv+k++rlv+pkkfa ++                 g+   +++l+++d+  +sW+++++y+++s+++v+tkGW++Fvk+++Lk
  Potri.003G212800.1 169 FQKDLTPSDVGKLNRLVIPKKFAVKYfpnifkdveddrvlnaAGV--DDTELIFYDRFMKSWKFRYCYWRSSQSFVFTKGWNRFVKEKKLK 257
                         89****************************998888877765333..6789**************************************** PP

                         TT-EEEEE CS
                  B3  76 egDfvvFk 83 
                         e+D+++F+
  Potri.003G212800.1 258 EKDIIIFY 265
                         *******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.65E-2443101No hitNo description
SuperFamilySSF541712.62E-1544101IPR016177DNA-binding domain
PfamPF008472.1E-64490IPR001471AP2/ERF domain
PROSITE profilePS5103217.4384499IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-174499IPR001471AP2/ERF domain
SMARTSM003801.0E-2144105IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.107.8E-32164269IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-25167269IPR015300DNA-binding pseudobarrel domain
CDDcd100174.56E-23168265No hitNo description
SMARTSM010196.9E-21169280IPR003340B3 DNA binding domain
PROSITE profilePS5086311.505169290IPR003340B3 DNA binding domain
PfamPF023622.4E-24169265IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MEDQDASSSM ISSAKSPTIN VETLAFSTSN KLGRLHSNIG NVAKFKGIVP QKNGHWGAQI  60
YSNHQRIWLG TFKTEKEAAM AYDSAAIKLR STDSHRNFPW NDRNVQEPSF QNQYSTEEIL  120
NMIRDGSYQQ IFVDFIMKQS QREEIGGSDD PNGRRVHADD EQFSCIQLFQ KDLTPSDVGK  180
LNRLVIPKKF AVKYFPNIFK DVEDDRVLNA AGVDDTELIF YDRFMKSWKF RYCYWRSSQS  240
FVFTKGWNRF VKEKKLKEKD IIIFYTCACP NKVLEQHGQG QYFSMIDVVY CNGQGGKVDG  300
FNQTEDVQRE LAVVLRQNMR KKLQKDGKEL KEEKETLKNK VKQKGFRLFG VQINEVELQL  360
QPCFQTGTE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-2516826413100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G212800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304025.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680
SwissprotQ9C6P51e-112RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLB9GYV20.0B9GYV2_POPTR; Uncharacterized protein
STRINGPOPTR_0003s21810.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Representative plantOGRP10227710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-106RAV family protein