PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G204700.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 455aa    MW: 51187 Da    PI: 6.5627
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G204700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix64.32.7e-20123219185
            trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 
                         +Wt++ v++Li ++  ++++   +            +kk++W+ vsk m  +g+++sp+qC++k+++lnkryk+++e+ +++ +++++++ 
  Potri.003G204700.1 123 KWTDNIVRLLISVVACVGDDDTFDGtgglkrksgllQKKGKWKTVSKLMIGKGCHVSPQQCEDKFNDLNKRYKRLNEILGRGtSCRVVENP 213
                         7************99555544433223455566888**********************************************669999999 PP

            trihelix  80 pyfdql 85 
                         ++ d++
  Potri.003G204700.1 214 ALMDSM 219
                         888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-17121216No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MDNSGLRGRF LSDSSGGLLD LESPIHRHQQ SQLGHPSLAH QHQMNVMGCF DNDHQPSGLM  60
EMKGSTSKGY LVNFGKGRAA SPFNGAHSGD GSEDDDQSFM EDGNGENSTG AKGKQGSPWQ  120
RMKWTDNIVR LLISVVACVG DDDTFDGTGG LKRKSGLLQK KGKWKTVSKL MIGKGCHVSP  180
QQCEDKFNDL NKRYKRLNEI LGRGTSCRVV ENPALMDSMP HLSAKAKDDV RKILSSKHLF  240
YKEICAYHNG QRIPNCQDFD LQGCSLPLER CSKDMNGSGG DEVEGNDDSD DDESNNEADN  300
NADENGESVG QLCERIVNEE HSHLCSQSGR QNSFGVEMTA IFQDTNVSPW ERKEWIKKQR  360
LQLLEQRVNI KAQAFELEKQ QFKWLRYCSK KDKEFERLRL ENEMMRLENR QSAFQLRQKQ  420
LEMGLRSSEP AYDPTSLGID RVQGRDQIDL GRHH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G204700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164130.0AC216413.1 Populus trichocarpa clone POP035-J17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024453534.10.0uncharacterized protein LOC7460202
RefseqXP_024453535.10.0uncharacterized protein LOC7460202
RefseqXP_024453536.10.0uncharacterized protein LOC7460202
RefseqXP_024453537.10.0uncharacterized protein LOC7460202
TrEMBLA0A2K2BA570.0A0A2K2BA57_POPTR; Uncharacterized protein
STRINGPOPTR_0003s20370.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105463240
Representative plantOGRP27961329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.16e-65sequence-specific DNA binding transcription factors